Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   G3R43_RS28985 Genome accession   NZ_LR739069
Coordinates   6189617..6190141 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PcyII-40 isolate PcyII-40     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6184617..6195141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R43_RS28970 (PERCYII40_5785) aroB 6185733..6186839 (-) 1107 WP_023096238.1 3-dehydroquinate synthase -
  G3R43_RS28975 (PERCYII40_5786) aroK 6186889..6187407 (-) 519 WP_003095833.1 shikimate kinase AroK -
  G3R43_RS28980 (PERCYII40_5787) pilQ 6187419..6189563 (-) 2145 WP_162291230.1 type 4a pilus secretin PilQ Machinery gene
  G3R43_RS28985 (PERCYII40_5788) comL/pilP 6189617..6190141 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  G3R43_RS28990 (PERCYII40_5789) pilO 6190138..6190761 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  G3R43_RS28995 (PERCYII40_5790) pilN 6190758..6191354 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  G3R43_RS29000 (PERCYII40_5791) pilM 6191354..6192418 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  G3R43_RS29005 (PERCYII40_5792) - 6192603..6195074 (+) 2472 WP_003125627.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=1007381 G3R43_RS28985 WP_003095836.1 6189617..6190141(-) (comL/pilP) [Pseudomonas aeruginosa strain PcyII-40 isolate PcyII-40]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1007381 G3R43_RS28985 WP_003095836.1 6189617..6190141(-) (comL/pilP) [Pseudomonas aeruginosa strain PcyII-40 isolate PcyII-40]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment