Detailed information    

insolico Bioinformatically predicted

Overview

Name   eppA   Type   Machinery gene
Locus tag   Mjas_RS01335 Genome accession   NZ_CP157522
Coordinates   267901..268935 (+) Length   344 a.a.
NCBI ID   WP_421078002.1    Uniprot ID   -
Organism   Methanothermococcus sp. Ax23     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 262901..273935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Mjas_RS01315 (Mjas_01310) - 263697..264701 (-) 1005 WP_421077998.1 methionine synthase -
  Mjas_RS01320 (Mjas_01315) ade 264717..266420 (-) 1704 WP_421077999.1 adenine deaminase -
  Mjas_RS01325 (Mjas_01320) - 266599..267366 (-) 768 WP_421078000.1 HDIG domain-containing metalloprotein -
  Mjas_RS01330 (Mjas_01325) - 267482..267853 (+) 372 WP_421078001.1 cysteine-rich small domain-containing protein -
  Mjas_RS01335 (Mjas_01330) eppA 267901..268935 (+) 1035 WP_421078002.1 A24 family peptidase C-terminal domain-containing protein Machinery gene
  Mjas_RS01340 (Mjas_01335) - 268970..270235 (-) 1266 WP_421078003.1 cation:proton antiporter -
  Mjas_RS01345 (Mjas_01340) nuoB 270367..271107 (-) 741 WP_421078004.1 NADH-quinone oxidoreductase subunit NuoB -
  Mjas_RS01350 (Mjas_01345) - 271120..272685 (-) 1566 WP_421078005.1 hydrogenase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38991.69 Da        Isoelectric Point: 7.3629

>NTDB_id=1007371 Mjas_RS01335 WP_421078002.1 267901..268935(+) (eppA) [Methanothermococcus sp. Ax23]
MISFDYLAIAYILNFILLCIATYTDIKKREIPHTIIILMILINLPVGYYLFGIESIWAFFATLVLCLILGIGMGGGDIKL
FTALAPLFAYGENIFYIPKPILLLIGISAVFAALYPMTNILRTYWKDIIPSSTGLAVVFGFLIYLLNHYSIPYASLFLWG
YIILSIFISRKIPQYKDIIKKAGYLAPIYLIGIYLIDSSYFINHNILLSFIIYVGELTLISIVIYALTGAEISSKKSVSE
LKEGDILRDIIYIKDKDVKVESANILKRFKMMVNAELGKNDGYDKIIMTDGEGLYKEDVELLQKLHKEGKIPGELNLITT
YPFVPFVLVGYVVVLVLHYYFNIL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1007371 Mjas_RS01335 WP_421078002.1 267901..268935(+) (eppA) [Methanothermococcus sp. Ax23]
ATGATTAGTTTCGATTATTTGGCTATTGCATACATTCTTAATTTTATTCTTTTATGTATTGCAACATATACCGATATTAA
AAAAAGGGAAATTCCCCATACTATCATTATTTTGATGATTTTGATAAATTTACCTGTTGGATATTATTTATTTGGTATTG
AATCCATTTGGGCATTTTTTGCAACATTGGTTTTATGTTTAATACTTGGAATAGGTATGGGTGGTGGAGATATAAAACTT
TTCACCGCATTAGCTCCGCTGTTTGCCTATGGTGAAAATATATTCTACATCCCAAAACCTATATTGCTATTAATTGGTAT
AAGTGCAGTATTTGCTGCGCTGTATCCAATGACCAATATATTAAGAACCTATTGGAAGGATATTATTCCATCATCAACAG
GTTTAGCCGTAGTATTTGGATTTTTGATATATCTATTGAATCATTATAGTATTCCCTATGCTTCGCTGTTTCTTTGGGGG
TATATAATACTTTCAATATTTATATCTCGAAAAATACCACAATATAAAGATATTATAAAAAAAGCTGGTTATTTAGCACC
GATTTATTTAATTGGAATTTATTTAATTGACAGCAGTTATTTTATCAATCACAATATTCTTCTGTCGTTTATCATATATG
TGGGGGAGCTCACACTTATATCAATAGTAATTTATGCCTTAACTGGTGCTGAAATCTCTTCAAAAAAATCTGTTTCTGAA
TTAAAAGAAGGGGATATTTTAAGGGATATTATTTATATAAAAGATAAGGATGTTAAGGTAGAAAGTGCAAATATACTAAA
AAGATTTAAAATGATGGTAAATGCGGAACTGGGAAAAAATGATGGATATGATAAAATAATTATGACTGATGGAGAAGGAC
TATATAAGGAAGATGTAGAGCTCTTGCAAAAACTGCACAAAGAAGGAAAAATACCGGGTGAATTAAATTTAATTACAACA
TATCCATTTGTTCCATTTGTGCTGGTTGGGTATGTGGTGGTTTTAGTGCTCCATTATTATTTTAATATATTATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(13-115)

Archaeal Peptidase A24 C-terminal Domain (Arc_PepC)

(210-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eppA Methanococcus maripaludis strain DSM 2067

60.933

99.709

0.608

Multiple sequence alignment