Detailed information NTG1007319

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G3R43_RS07565
• Genome accession: NZ_LR739069
• Coordinates: 1599069..1600073 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PcyII-40 isolate PcyII-40
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1594069..1605073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3R43_RS07535 (PERCYII40_1505)	fghA	1594161..1595012 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
G3R43_RS07540 (PERCYII40_1506)	ispF	1595083..1595556 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G3R43_RS07545 (PERCYII40_1507)	truD	1595553..1596620 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
G3R43_RS07550 (PERCYII40_1508)	surE	1596608..1597357 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
G3R43_RS07555 (PERCYII40_1509)	-	1597390..1598025 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
G3R43_RS07560 (PERCYII40_1510)	-	1598071..1598964 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
G3R43_RS07565 (PERCYII40_1511)	rpoS	1599069..1600073 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
G3R43_RS07570 (PERCYII40_1513)	fdxA	1600500..1600823 (-)	324	WP_003092272.1	ferredoxin FdxA	-
G3R43_RS07575 (PERCYII40_1514)	mutS	1600890..1603457 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
G3R43_RS07580 (PERCYII40_1515)	-	1603583..1604590 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=1007319 G3R43_RS07565 WP_003113871.1 1599069..1600073(+) (rpoS) [Pseudomonas aeruginosa strain PcyII-40 isolate PcyII-40]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=1007319 G3R43_RS07565 WP_003113871.1 1599069..1600073(+) (rpoS) [Pseudomonas aeruginosa strain PcyII-40 isolate PcyII-40]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653