Detailed information NTG1007219

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G3R42_RS06970
• Genome accession: NZ_LR739068
• Coordinates: 1471900..1472904 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PcyII-29 isolate PcyII-29
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1466900..1477904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3R42_RS06940 (PERCYII29_1396)	fghA	1466992..1467843 (+)	852	WP_003098562.1	S-formylglutathione hydrolase	-
G3R42_RS06945 (PERCYII29_1397)	ispF	1467914..1468387 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G3R42_RS06950 (PERCYII29_1398)	truD	1468384..1469451 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
G3R42_RS06955 (PERCYII29_1399)	surE	1469439..1470188 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
G3R42_RS06960 (PERCYII29_1400)	-	1470221..1470856 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
G3R42_RS06965 (PERCYII29_1401)	-	1470902..1471795 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
G3R42_RS06970 (PERCYII29_1402)	rpoS	1471900..1472904 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
G3R42_RS06975 (PERCYII29_1404)	fdxA	1473331..1473654 (-)	324	WP_003092272.1	ferredoxin FdxA	-
G3R42_RS06980 (PERCYII29_1405)	mutS	1473721..1476288 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
G3R42_RS06985 (PERCYII29_1406)	-	1476414..1477421 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=1007219 G3R42_RS06970 WP_003113871.1 1471900..1472904(+) (rpoS) [Pseudomonas aeruginosa strain PcyII-29 isolate PcyII-29]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=1007219 G3R42_RS06970 WP_003113871.1 1471900..1472904(+) (rpoS) [Pseudomonas aeruginosa strain PcyII-29 isolate PcyII-29]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653