Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GPW69_RS09775 Genome accession   NZ_LR738724
Coordinates   2022893..2024260 (-) Length   455 a.a.
NCBI ID   WP_024404944.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2017893..2029260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS09750 - 2018650..2019930 (-) 1281 WP_044772041.1 MFS transporter -
  GPW69_RS09755 - 2020021..2020680 (-) 660 WP_074391215.1 LiaF transmembrane domain-containing protein -
  GPW69_RS09760 - 2020685..2021131 (-) 447 WP_074391216.1 LytTR family DNA-binding domain-containing protein -
  GPW69_RS09765 - 2021309..2022067 (-) 759 WP_013730631.1 TIGR00266 family protein -
  GPW69_RS09770 - 2022275..2022769 (-) 495 WP_074391217.1 beta-class carbonic anhydrase -
  GPW69_RS09775 radA 2022893..2024260 (-) 1368 WP_024404944.1 DNA repair protein RadA Machinery gene
  GPW69_RS09780 - 2024267..2024800 (-) 534 WP_074391218.1 histidine phosphatase family protein -
  GPW69_RS09785 - 2024807..2025250 (-) 444 WP_002939955.1 dUTP diphosphatase -
  GPW69_RS09790 - 2025269..2026255 (-) 987 WP_024384172.1 virulence RhuM family protein -
  GPW69_RS09795 - 2026274..2026810 (-) 537 WP_141668693.1 hypothetical protein -
  GPW69_RS09800 - 2026905..2027774 (-) 870 WP_228478013.1 helix-turn-helix domain-containing protein -
  GPW69_RS09805 - 2028113..2028397 (+) 285 WP_024384175.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49871.38 Da        Isoelectric Point: 6.1911

>NTDB_id=1007191 GPW69_RS09775 WP_024404944.1 2022893..2024260(-) (radA) [Streptococcus suis isolate 9401240]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1007191 GPW69_RS09775 WP_024404944.1 2022893..2024260(-) (radA) [Streptococcus suis isolate 9401240]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGTCC
AAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTTGCAGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCCCGCACCAAGACCAACATGGAAGAGTTCAAC
CGCGTCCTCGGTGGCGGTGTGGTACCAGGAAGTCTGGTCTTGATCGGAGGCGATCCAGGGATTGGCAAATCCACCCTGCT
CTTGCAGGTTTCTACCCAGCTTTCGACCATTGGCACGGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTAACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTCATCGTCG
GCCACATGACCAAGGAAGGCACCTTGGCTGGACCGCGGACCCTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGCTTGGTCGAAGTCCTCAATCCTAGTGAAGTCTTTCTAGAAGAGCGTCTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCAGAAGTGCAGGCCCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCGGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTATAAGGATAAGCCGACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCTCTGACCGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TCAACTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA/sms Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624