Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GPW69_RS06600 Genome accession   NZ_LR738724
Coordinates   1332292..1334505 (-) Length   737 a.a.
NCBI ID   WP_044686005.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1327292..1339505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS06570 - 1327419..1328213 (-) 795 WP_074391872.1 Nif3-like dinuclear metal center hexameric protein -
  GPW69_RS06575 - 1328203..1328886 (-) 684 WP_074391948.1 tRNA (adenine(22)-N(1))-methyltransferase -
  GPW69_RS06580 - 1328888..1329562 (-) 675 WP_074391871.1 DnaD domain-containing protein -
  GPW69_RS06585 metA 1329572..1330513 (-) 942 WP_014637718.1 homoserine O-acetyltransferase MetA -
  GPW69_RS06590 - 1330617..1331129 (-) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  GPW69_RS06595 - 1331144..1332313 (-) 1170 WP_074391870.1 DUF3114 domain-containing protein -
  GPW69_RS06600 recJ 1332292..1334505 (-) 2214 WP_044686005.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GPW69_RS06605 cls 1334662..1336209 (-) 1548 WP_044769163.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82661.36 Da        Isoelectric Point: 4.5231

>NTDB_id=1007162 GPW69_RS06600 WP_044686005.1 1332292..1334505(-) (recJ) [Streptococcus suis isolate 9401240]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFIQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELMKIAGIDMDSLDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHEIALMINSKN
VERKDVVQAIYDEAKTMLRHDRPVQVLAKEGWNPGVLGIVAGRLLEELHQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLADYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAGYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKEAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=1007162 GPW69_RS06600 WP_044686005.1 1332292..1334505(-) (recJ) [Streptococcus suis isolate 9401240]
GTGATAAAACCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGTATCCATTCGGCGGAAGAATTGCATACTTTCATACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGATGCAGATGGCATGACCTCGGCATCTATTCTGAAAGAAACTCTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAATCGTTTCACAGATGGCTATGGGCCAAATCAATCAGTTTACAAGTATT
TTATCGAGCAGCAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAGGGAAATTATCCCTTCAAACATTTGGCAGGTTGCGGTGTGGCTTTCAAATTGGCCTGTGCCCTTCTTG
AAACGGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTGTCCCTTCTCAAACAGACCGAACGTGCAGGCCTCCAAGAATTGATGAAAATAGCTGGCAT
TGATATGGATAGCCTTGATGAAGAAACAGTTGGCTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGATGATC
CAAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATGAGATTGCTCTCATGATTAACAGTAAAAAT
GTAGAACGCAAAGACGTTGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCATGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCACCAGCCTGTTATCG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCTGTTGAAGCGGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTAACCTTGGCAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTACGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTAGAATCAGCAAGAACTATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCTGGATTTGATGTGGTTGCTTTTGGTAAGGGTAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTTACCTTGTCTGTCAATCAATGGAATGGTAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAACAACATCCTATTCCTGCAGGAGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTAGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAGGCCATTTATTTTAAAAATGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAGACTATTTACCAATTTGATGAGTTTGATGTCCGCTACAAACTGAAAGATTTGGCTGGTTACTTAAAAATTAA
GGACAGTCTCTTGGTCAAAATGATTCAGATTTTCCAAGAATTAGAATTTGTTACCATTACGGATGGGGTTATGCGGGTCA
ACAAAGAGGCGCAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGTTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-433)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.826

99.864

0.727
  recJ Bacillus subtilis subsp. subtilis str. 168

37.701

100

0.383