Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GPW69_RS05515 Genome accession   NZ_LR738724
Coordinates   1112481..1114217 (-) Length   578 a.a.
NCBI ID   WP_074391158.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1107481..1119217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS05500 - 1108332..1109618 (-) 1287 WP_024410098.1 homoserine dehydrogenase -
  GPW69_RS05505 - 1109723..1110646 (+) 924 WP_074391156.1 polysaccharide deacetylase family protein -
  GPW69_RS05510 rcrQ 1110703..1112472 (-) 1770 WP_074391157.1 ABC transporter ATP-binding protein Regulator
  GPW69_RS05515 rcrP 1112481..1114217 (-) 1737 WP_074391158.1 ABC transporter ATP-binding protein Regulator
  GPW69_RS05520 - 1114293..1114535 (-) 243 WP_012028079.1 KH domain-containing protein -
  GPW69_RS05525 rpsP 1114557..1114829 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  GPW69_RS05530 - 1114954..1115262 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  GPW69_RS05535 pcp 1115262..1115909 (-) 648 WP_024411282.1 pyroglutamyl-peptidase I -
  GPW69_RS05540 - 1115906..1116667 (-) 762 WP_044761281.1 class I SAM-dependent methyltransferase -
  GPW69_RS05545 - 1116738..1117052 (-) 315 WP_044667780.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65120.43 Da        Isoelectric Point: 5.1073

>NTDB_id=1007157 GPW69_RS05515 WP_074391158.1 1112481..1114217(-) (rcrP) [Streptococcus suis isolate 9401240]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRITLAYAAGQL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFAEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVIVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALEPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1007157 GPW69_RS05515 WP_074391158.1 1112481..1114217(-) (rcrP) [Streptococcus suis isolate 9401240]
ATGAATCTGATTTGGACCTACTTAAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTAGGGGCCTTCTTATTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGACTGATTGTCTTGCTTGGAATTGTTGGACGAATAACGCTTGCCTATGCGGCTGGTCAGTTG
ACAACCAATATAGTAAAAGATATTCGAAATGATTTGTACGAGAAAATTCAGGACTACTCTCATCACGAGTATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTCTTGATGCAGTTTGCGGAGATGGTATTGAAGCTGG
GAATTATCACTCCCTTGATGATGATTGCCTCTGTCATCATGACCTTGGTAACTAGTCCAAGTCTGGCTTGGACAGTCGCA
GTAGCTATGCCGTTTCTCGTTATCGTTATTTTCTATGTAGCAACCAAAACCCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGATACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAACTCTTTAATCTGACTGGTCTGACAGAA
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTCGCTTTGGAGCCCTTGAAAACAGGTAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCCGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GATGGGATTACTGAAACAGACACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGGGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGTTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAGAAGTTTGACACCCATCTAGCAGAAGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAGCAGCCGGATATTTATATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGTCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCTCTGACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398

Multiple sequence alignment