Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GPW69_RS05510 Genome accession   NZ_LR738724
Coordinates   1110703..1112472 (-) Length   589 a.a.
NCBI ID   WP_074391157.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1105703..1117472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS05490 murB 1106325..1107233 (-) 909 WP_024410097.1 UDP-N-acetylmuramate dehydrogenase -
  GPW69_RS05495 thrB 1107468..1108328 (-) 861 WP_074391155.1 homoserine kinase -
  GPW69_RS05500 - 1108332..1109618 (-) 1287 WP_024410098.1 homoserine dehydrogenase -
  GPW69_RS05505 - 1109723..1110646 (+) 924 WP_074391156.1 polysaccharide deacetylase family protein -
  GPW69_RS05510 rcrQ 1110703..1112472 (-) 1770 WP_074391157.1 ABC transporter ATP-binding protein Regulator
  GPW69_RS05515 rcrP 1112481..1114217 (-) 1737 WP_074391158.1 ABC transporter ATP-binding protein Regulator
  GPW69_RS05520 - 1114293..1114535 (-) 243 WP_012028079.1 KH domain-containing protein -
  GPW69_RS05525 rpsP 1114557..1114829 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  GPW69_RS05530 - 1114954..1115262 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  GPW69_RS05535 pcp 1115262..1115909 (-) 648 WP_024411282.1 pyroglutamyl-peptidase I -
  GPW69_RS05540 - 1115906..1116667 (-) 762 WP_044761281.1 class I SAM-dependent methyltransferase -
  GPW69_RS05545 - 1116738..1117052 (-) 315 WP_044667780.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65745.82 Da        Isoelectric Point: 6.2808

>NTDB_id=1007156 GPW69_RS05510 WP_074391157.1 1110703..1112472(-) (rcrQ) [Streptococcus suis isolate 9401240]
MKNKSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQKVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTAGLTGQVSFEQVEFGYSEDKPLIRNFNLNVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGSIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=1007156 GPW69_RS05510 WP_074391157.1 1110703..1112472(-) (rcrQ) [Streptococcus suis isolate 9401240]
ATGAAGAATAAATCAGTATTTACCCGTGTTTGGGACTATTTACGTCGTTACAAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTAGAACCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCGTATTTCAAACAACAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGAAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTACGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGCACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATATGTCTGGCAGATTTCTCAGCCAGTCCAAACTTTGACCCAATTGGCACCACAGTTGCAGTCTGCCAAATCCTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCGCTGGAGTTGACAGCTGGTTTGACCGG
ACAAGTCAGCTTTGAACAGGTTGAATTTGGCTATTCAGAAGATAAGCCGCTTATCCGTAACTTTAATCTTAATGTTAAGC
CAGGAGAAATGGTGGCTATCGTTGGACCAACGGGGGCAGGTAAGACTACTCTTATCAACTTGCTCATGCGTTTCTACGAT
GTGACATCAGGTTCTATCAAAGTGGATGGTCAGGACATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCATTTTATCCGTACCCTGCCTGGTGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCTATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTAAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.729

100

0.438