Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GPW69_RS00215 Genome accession   NZ_LR738724
Coordinates   28821..29603 (+) Length   260 a.a.
NCBI ID   WP_024385103.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23821..34603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS00195 mreD 24642..25157 (+) 516 WP_074391014.1 rod shape-determining protein MreD -
  GPW69_RS00200 pcsB 25242..26498 (+) 1257 WP_024385105.1 peptidoglycan hydrolase PcsB -
  GPW69_RS00205 - 26601..27569 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  GPW69_RS00210 - 27656..28834 (+) 1179 WP_029172090.1 pyridoxal phosphate-dependent aminotransferase -
  GPW69_RS00215 recO 28821..29603 (+) 783 WP_024385103.1 DNA repair protein RecO Machinery gene
  GPW69_RS00220 plsX 29600..30607 (+) 1008 WP_044756061.1 phosphate acyltransferase PlsX -
  GPW69_RS00225 - 30600..30848 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  GPW69_RS00230 purC 30966..31673 (+) 708 WP_074391015.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30466.98 Da        Isoelectric Point: 5.4193

>NTDB_id=1007106 GPW69_RS00215 WP_024385103.1 28821..29603(+) (recO) [Streptococcus suis isolate 9401240]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEILTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=1007106 GPW69_RS00215 WP_024385103.1 28821..29603(+) (recO) [Streptococcus suis isolate 9401240]
ATGGAACGAATTGAAACTAGGGGATTAGTCCTTTACAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTTGTGAAACATGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCATTTAAGAAT
ATTAACGGCGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCAGATGCGGCCTTGCAGGATAAGGTTTA
TGACCCAGCCCTCTTTGCATTTTTGGTCAAGACCTTAGATTTGATGGAGTCGGGTTTGGACTATGAAATTTTGACCAATA
TCTTTGAAATTCAACTCTTGGGACGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTCGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669

Multiple sequence alignment