Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   GPW68_RS04610 Genome accession   NZ_LR738723
Coordinates   916305..916787 (-) Length   160 a.a.
NCBI ID   WP_024381385.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0088     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 911305..921787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW68_RS04585 pheT 911613..914012 (+) 2400 WP_012775584.1 phenylalanine--tRNA ligase subunit beta -
  GPW68_RS04590 - 914067..914333 (+) 267 WP_012775169.1 DUF2087 domain-containing protein -
  GPW68_RS04595 - 914354..914656 (-) 303 WP_002938072.1 hypothetical protein -
  GPW68_RS04600 - 914849..915592 (+) 744 WP_012027116.1 polyphosphate polymerase domain-containing protein -
  GPW68_RS04605 - 915579..916256 (+) 678 WP_002938079.1 DUF4956 domain-containing protein -
  GPW68_RS04610 mutX 916305..916787 (-) 483 WP_024381385.1 NUDIX hydrolase Machinery gene
  GPW68_RS04615 folE 916954..917517 (+) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  GPW68_RS04620 folP 917526..918338 (+) 813 WP_002938084.1 dihydropteroate synthase -
  GPW68_RS04625 folB 918331..918693 (+) 363 WP_012027113.1 dihydroneopterin aldolase -
  GPW68_RS04630 folK 918690..919178 (+) 489 WP_023369979.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  GPW68_RS04635 - 919229..920539 (+) 1311 WP_024394154.1 GntP family permease -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18540.89 Da        Isoelectric Point: 4.4960

>NTDB_id=1007057 GPW68_RS04610 WP_024381385.1 916305..916787(-) (mutX) [Streptococcus suis isolate GD-0088]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1007057 GPW68_RS04610 WP_024381385.1 916305..916787(-) (mutX) [Streptococcus suis isolate GD-0088]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGGGTCGGTGGCAAGCTGGAACCTGGCGAAACACCACAGGCTTGCG
CTATTCGTGAAGTCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775