Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPW68_RS02570 Genome accession   NZ_LR738723
Coordinates   484588..485322 (+) Length   244 a.a.
NCBI ID   WP_002943067.1    Uniprot ID   A0A0H3MU26
Organism   Streptococcus suis isolate GD-0088     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 479588..490322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW68_RS02545 - 480088..480396 (-) 309 WP_002938710.1 DUF1827 family protein -
  GPW68_RS02550 - 480451..480912 (-) 462 WP_002938708.1 NUDIX hydrolase -
  GPW68_RS02555 clpE 481098..483326 (-) 2229 WP_015646546.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  GPW68_RS02560 - 483550..483780 (+) 231 WP_002938704.1 DUF1797 family protein -
  GPW68_RS02565 - 483906..484595 (+) 690 WP_002938702.1 amino acid ABC transporter permease -
  GPW68_RS02570 amiE 484588..485322 (+) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  GPW68_RS02575 - 485452..486300 (+) 849 WP_024405613.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  GPW68_RS02585 - 487749..488042 (+) 294 WP_002938694.1 hypothetical protein -
  GPW68_RS02590 lepB 488032..488634 (+) 603 WP_014636242.1 signal peptidase I -
  GPW68_RS02595 - 488653..489039 (+) 387 WP_011922052.1 hypothetical protein -
  GPW68_RS02600 - 489040..489429 (-) 390 Protein_448 transposase -
  GPW68_RS02605 - 489397..490224 (+) 828 WP_012775002.1 class C sortase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26881.11 Da        Isoelectric Point: 4.7252

>NTDB_id=1007041 GPW68_RS02570 WP_002943067.1 484588..485322(+) (amiE) [Streptococcus suis isolate GD-0088]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1007041 GPW68_RS02570 WP_002943067.1 484588..485322(+) (amiE) [Streptococcus suis isolate GD-0088]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAAGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CAAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAGCGGATCGCTATTGCACGTGGTCTGGCTATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTTATGCAGGATTTAGC
CAAGTCGGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MU26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365

Multiple sequence alignment