Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GPW68_RS00210 Genome accession   NZ_LR738723
Coordinates   28574..29356 (+) Length   260 a.a.
NCBI ID   WP_024405850.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23574..34356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW68_RS00190 mreD 24395..24910 (+) 516 WP_002935339.1 rod shape-determining protein MreD -
  GPW68_RS00195 pcsB 24995..26251 (+) 1257 WP_012774880.1 peptidoglycan hydrolase PcsB -
  GPW68_RS00200 - 26354..27322 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  GPW68_RS00205 - 27409..28587 (+) 1179 WP_074389009.1 pyridoxal phosphate-dependent aminotransferase -
  GPW68_RS00210 recO 28574..29356 (+) 783 WP_024405850.1 DNA repair protein RecO Machinery gene
  GPW68_RS00215 plsX 29353..30360 (+) 1008 WP_011921644.1 phosphate acyltransferase PlsX -
  GPW68_RS00220 - 30353..30601 (+) 249 WP_011921645.1 phosphopantetheine-binding protein -
  GPW68_RS00225 purC 30719..31426 (+) 708 WP_011921646.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30452.95 Da        Isoelectric Point: 5.4231

>NTDB_id=1007007 GPW68_RS00210 WP_024405850.1 28574..29356(+) (recO) [Streptococcus suis isolate GD-0088]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYGDFIVKINDEGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=1007007 GPW68_RS00210 WP_024405850.1 28574..29356(+) (recO) [Streptococcus suis isolate GD-0088]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGACGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGGGGATTTTATCGTTAAAATCAATGATGAAGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTACATCTTAGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATTAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCCATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

68.924

96.538

0.665

Multiple sequence alignment