Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABLB95_RS13045 Genome accession   NZ_CP157451
Coordinates   2767090..2767533 (-) Length   147 a.a.
NCBI ID   WP_348908764.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain XH1688     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2762090..2772533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB95_RS13015 (ABLB95_13005) - 2762658..2763644 (+) 987 WP_017400866.1 triacylglycerol lipase -
  ABLB95_RS13020 (ABLB95_13010) - 2763746..2764717 (+) 972 WP_034669855.1 triacylglycerol lipase -
  ABLB95_RS13025 (ABLB95_13015) rplS 2764778..2765152 (-) 375 WP_005024307.1 50S ribosomal protein L19 -
  ABLB95_RS13030 (ABLB95_13020) trmD 2765327..2766076 (-) 750 WP_005404606.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABLB95_RS13035 (ABLB95_13025) rimM 2766120..2766668 (-) 549 WP_348908763.1 ribosome maturation factor RimM -
  ABLB95_RS13040 (ABLB95_13030) rpsP 2766689..2766946 (-) 258 WP_005018185.1 30S ribosomal protein S16 -
  ABLB95_RS13045 (ABLB95_13035) pilE 2767090..2767533 (-) 444 WP_348908764.1 type IV pilin protein Machinery gene
  ABLB95_RS13050 (ABLB95_13040) - 2767520..2768086 (-) 567 WP_050775269.1 type IV pilin protein -
  ABLB95_RS13055 (ABLB95_13045) - 2768070..2771990 (-) 3921 WP_034669852.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15961.24 Da        Isoelectric Point: 9.8225

>NTDB_id=1006989 ABLB95_RS13045 WP_348908764.1 2767090..2767533(-) (pilE) [Acinetobacter radioresistens strain XH1688]
MKVGKYNGFTLIEVMIVVAIIGILAAIAYPSYSQYIIRTKRTDAQSEMLQVAQRMQTYRAANNTFAGATINTVYGSSVIP
KQGTALYNLTFSPSPTTANEWKLIATPISSTSQANDGVICLNHQGQKFWVKGASACALSNTSNWDGR

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1006989 ABLB95_RS13045 WP_348908764.1 2767090..2767533(-) (pilE) [Acinetobacter radioresistens strain XH1688]
ATGAAAGTTGGTAAATATAATGGTTTTACGCTTATAGAAGTTATGATTGTAGTAGCTATTATTGGAATTTTAGCAGCGAT
TGCCTATCCTTCTTATAGCCAATATATTATAAGAACCAAACGTACAGATGCACAAAGTGAAATGTTGCAAGTTGCACAGC
GTATGCAAACCTATAGAGCAGCTAATAATACGTTCGCTGGTGCTACAATAAATACAGTTTATGGAAGCAGCGTGATCCCG
AAACAGGGAACAGCGCTTTATAACTTAACTTTTAGTCCCTCCCCGACCACAGCAAATGAATGGAAATTAATAGCGACACC
AATTAGCAGCACATCTCAGGCTAATGATGGGGTTATTTGTCTGAATCACCAAGGCCAAAAATTCTGGGTCAAAGGTGCCA
GTGCCTGTGCTTTATCTAATACCTCCAACTGGGACGGCCGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-120)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

59.574

95.918

0.571
  comF Acinetobacter baylyi ADP1

53.901

95.918

0.517

Multiple sequence alignment