Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABLB95_RS01275 Genome accession   NZ_CP157451
Coordinates   265483..265809 (+) Length   108 a.a.
NCBI ID   WP_005017085.1    Uniprot ID   A0A062BQE3
Organism   Acinetobacter radioresistens strain XH1688     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 260483..270809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB95_RS01250 (ABLB95_01250) hemC 261113..262033 (+) 921 WP_248123208.1 hydroxymethylbilane synthase -
  ABLB95_RS01255 (ABLB95_01255) - 262039..262821 (+) 783 WP_111280173.1 uroporphyrinogen-III synthase -
  ABLB95_RS01260 (ABLB95_01260) - 262818..263666 (+) 849 WP_005405720.1 hypothetical protein -
  ABLB95_RS01265 (ABLB95_01265) - 263676..264869 (+) 1194 WP_348909009.1 heme biosynthesis protein HemY -
  ABLB95_RS01270 (ABLB95_01270) - 264879..265316 (+) 438 WP_017400647.1 thioesterase family protein -
  ABLB95_RS01275 (ABLB95_01275) hns 265483..265809 (+) 327 WP_005017085.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABLB95_RS01280 (ABLB95_01280) gspN 265975..266718 (+) 744 WP_138000419.1 type II secretion system protein N -
  ABLB95_RS01285 (ABLB95_01285) - 266718..267560 (+) 843 WP_005023006.1 type II secretion system protein N -
  ABLB95_RS01290 (ABLB95_01290) gspD 267602..269857 (+) 2256 WP_017400649.1 type II secretion system secretin GspD -
  ABLB95_RS01295 (ABLB95_01295) - 269923..270582 (+) 660 WP_017400650.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12369.08 Da        Isoelectric Point: 4.8451

>NTDB_id=1006963 ABLB95_RS01275 WP_005017085.1 265483..265809(+) (hns) [Acinetobacter radioresistens strain XH1688]
MKPDISELSVEDLKRLQLEAEALIASKKDQAVDEAYEQVLEIAENVGLTIEQLLEFGAQKRKKTTRKSVEPRYRNTENPE
ETWTGRGKQPRWLVAALEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1006963 ABLB95_RS01275 WP_005017085.1 265483..265809(+) (hns) [Acinetobacter radioresistens strain XH1688]
ATGAAGCCAGATATTAGTGAACTTTCGGTAGAAGATCTCAAAAGATTACAGCTTGAAGCCGAAGCATTAATCGCCAGCAA
AAAAGATCAAGCAGTAGATGAAGCTTATGAACAGGTTTTAGAAATTGCTGAAAATGTGGGTCTGACTATTGAACAGTTGC
TAGAATTTGGAGCGCAAAAGCGCAAGAAAACAACACGTAAATCAGTAGAGCCACGTTATCGTAATACTGAAAATCCTGAA
GAAACTTGGACAGGACGTGGTAAGCAGCCACGCTGGTTAGTAGCAGCCCTTGAAAAAGGTGCAAAACTTGAAGATTTTCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BQE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment