Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABLB99_RS17035 Genome accession   NZ_CP157447
Coordinates   3577515..3577841 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter nosocomialis strain XH1727     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3572515..3582841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS17015 (ABLB99_17010) - 3572613..3573242 (-) 630 WP_106466245.1 FHA domain-containing protein -
  ABLB99_RS17020 (ABLB99_17015) gspD 3573283..3575559 (-) 2277 WP_106466246.1 type II secretion system secretin GspD -
  ABLB99_RS17025 (ABLB99_17020) - 3575601..3576440 (-) 840 WP_004710893.1 type II secretion system protein N -
  ABLB99_RS17030 (ABLB99_17025) gspN 3576440..3577183 (-) 744 WP_004710896.1 type II secretion system protein N -
  ABLB99_RS17035 (ABLB99_17030) hns 3577515..3577841 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABLB99_RS17040 (ABLB99_17035) - 3578036..3578476 (-) 441 WP_016803694.1 thioesterase family protein -
  ABLB99_RS17045 (ABLB99_17040) - 3578484..3579677 (-) 1194 WP_348925142.1 heme biosynthesis protein HemY -
  ABLB99_RS17050 (ABLB99_17045) - 3579687..3580526 (-) 840 WP_106466247.1 hypothetical protein -
  ABLB99_RS17055 (ABLB99_17050) - 3580535..3581302 (-) 768 WP_106466248.1 uroporphyrinogen-III synthase -
  ABLB99_RS17060 (ABLB99_17055) hemC 3581307..3582224 (-) 918 WP_213065743.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1006946 ABLB99_RS17035 WP_002053185.1 3577515..3577841(-) (hns) [Acinetobacter nosocomialis strain XH1727]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1006946 ABLB99_RS17035 WP_002053185.1 3577515..3577841(-) (hns) [Acinetobacter nosocomialis strain XH1727]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCATATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGCTACCGTAACAAAAACAACTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATCGAAAAGGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991

Multiple sequence alignment