Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABLB99_RS16535 Genome accession   NZ_CP157447
Coordinates   3464327..3466555 (+) Length   742 a.a.
NCBI ID   WP_106465269.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1727     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3459327..3471555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS16505 (ABLB99_16500) lnt 3459362..3460921 (+) 1560 WP_106465271.1 apolipoprotein N-acyltransferase -
  ABLB99_RS16510 (ABLB99_16505) - 3460923..3461261 (-) 339 WP_000434938.1 tRNA-binding protein -
  ABLB99_RS16515 (ABLB99_16510) - 3461502..3461762 (+) 261 WP_004710772.1 DUF2798 domain-containing protein -
  ABLB99_RS16520 (ABLB99_16515) - 3461824..3462168 (-) 345 WP_083009307.1 hypothetical protein -
  ABLB99_RS16525 (ABLB99_16520) gspG 3462434..3462949 (-) 516 WP_106465270.1 type II secretion system major pseudopilin GspG -
  ABLB99_RS16530 (ABLB99_16525) gspF 3462973..3464178 (-) 1206 WP_006582259.1 type II secretion system inner membrane protein GspF -
  ABLB99_RS16535 (ABLB99_16530) priA 3464327..3466555 (+) 2229 WP_106465269.1 primosomal protein N' Machinery gene
  ABLB99_RS16540 (ABLB99_16535) - 3466631..3468472 (+) 1842 WP_106465268.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ABLB99_RS16545 (ABLB99_16540) - 3468638..3469513 (+) 876 WP_004710781.1 Hsp33 family molecular chaperone HslO -
  ABLB99_RS16550 (ABLB99_16545) - 3469650..3470261 (+) 612 WP_004883506.1 LysE family translocator -
  ABLB99_RS16555 (ABLB99_16550) - 3470411..3471370 (+) 960 WP_106465267.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83943.84 Da        Isoelectric Point: 8.6657

>NTDB_id=1006942 ABLB99_RS16535 WP_106465269.1 3464327..3466555(+) (priA) [Acinetobacter nosocomialis strain XH1727]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DNEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTVKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=1006942 ABLB99_RS16535 WP_106465269.1 3464327..3466555(+) (priA) [Acinetobacter nosocomialis strain XH1727]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATAATGAACCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGTGA
GGTCATGCAAACTGCTTTACCTGCGTTATTACGTCAGGGTAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGTTGAAGCTCTGCTAAAACGCTCAATCAAACAACAAGACGCTTATCAAATTTTAAAATTACACCCTGCT
GGAACTACAGAAAATATTCTTAATTTGAGTGGTGTAGAAACTGCGACACTTAAAGCACTTCAAAAGAAAGGACTGGTAGA
CTGTACGCTTGAGCCACATGACTTTAGCCCAGCACCCGTACAATTGGCTCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCATTAATGCACAGCATCAATATCAAGCGTTTTTGTTGGATGGTTTAACGGGAAGTGGTAAA
ACCGAAGTTTACCTGCACATCATGCATGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTTCCTGAAATTGGTTT
AACCCCTCAAACCATTTCACGCTTTAAGTCTCGTTTTAACTGTGACATTGCTTTATTACATTCGGGCTTAAATGATTCGA
AGCGCTTACAAGCATGGCAACAGGCACAGACTGGAAAGGCCTCTATTATTTTAGGGACGCGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAACAAGAAGGCTTCCGTTACCATGC
CCGTGATGTCGCGCTTTACCGCGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACCCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAACAACATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACTCTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCATACTCAGCCTTATTCTTATTTACATTGTCACCACTGCGGCACGGTT
CATCGCTTGCCAGATCACTGCCCTGAATGTCAGCAAAAGAGCCTCAAAACTTTAGGCGCTGGAACAGTCAAGGTTGAAGA
GCATTTACAAGAATTATTTCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAGCAAAATAAACCTTCGATTTTACTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGACATCGATGCAGGTTTATTGAGTGTCGATATTCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGCCATGTTTATTTACAGACTTTAAGGCCAGATC
ACCCTTTATTAACCACGCTAATTGAAAAAGATTATCGGGCAGTTGCCAAGCAAACATTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGCTATGCCGTACTAATACGCGCTGAATCGAAAGATCGCGATTATACCTTGCATTTTTTAAATGAAGC
TGCAGAGCAACTTCGCCAAATTGCAGGTGATATTGTTGATATTTGGGGGCCAATTCCCGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTATTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTCCGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

98.113

100

0.981

Multiple sequence alignment