Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABLB99_RS15345 Genome accession   NZ_CP157447
Coordinates   3213547..3213957 (-) Length   136 a.a.
NCBI ID   WP_004710569.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1727     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3208547..3218957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS15315 (ABLB99_15310) - 3208632..3208901 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABLB99_RS15320 (ABLB99_15315) rapZ 3208898..3209749 (-) 852 WP_002054547.1 RNase adapter RapZ -
  ABLB99_RS15325 (ABLB99_15320) panC 3209772..3210620 (-) 849 WP_004710563.1 pantoate--beta-alanine ligase -
  ABLB99_RS15330 (ABLB99_15325) panB 3210624..3211433 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABLB99_RS15335 (ABLB99_15330) folK 3211479..3211961 (-) 483 WP_139887276.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABLB99_RS15340 (ABLB99_15335) pcnB 3211958..3213421 (-) 1464 WP_004710567.1 polynucleotide adenylyltransferase PcnB -
  ABLB99_RS15345 (ABLB99_15340) comEA 3213547..3213957 (-) 411 WP_004710569.1 ComEA family DNA-binding protein Machinery gene
  ABLB99_RS15350 (ABLB99_15345) mazG 3213926..3214732 (-) 807 WP_004710571.1 nucleoside triphosphate pyrophosphohydrolase -
  ABLB99_RS15355 (ABLB99_15350) - 3214845..3215618 (+) 774 WP_002054535.1 SDR family oxidoreductase -
  ABLB99_RS15360 (ABLB99_15355) - 3215664..3217970 (-) 2307 WP_002054537.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15631.09 Da        Isoelectric Point: 10.3101

>NTDB_id=1006938 ABLB99_RS15345 WP_004710569.1 3213547..3213957(-) (comEA) [Acinetobacter nosocomialis strain XH1727]
MRYSMIIWKNNCFILMMLCLGVISTSIFAQSFDQNFQEWKAKQQMYDQKLNVSKSSHSYGSKIYQTKSLNDSIGQIHLNQ
ATVNEFRQLKGIGEKKAQAIVEYRQKNGGFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1006938 ABLB99_RS15345 WP_004710569.1 3213547..3213957(-) (comEA) [Acinetobacter nosocomialis strain XH1727]
ATGCGATACAGCATGATAATTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGTGTGATTTCAACTTCGAT
TTTTGCTCAATCGTTTGATCAGAATTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AATCTTCTCATTCTTATGGTTCTAAAATTTATCAAACGAAGAGTTTAAATGATTCTATTGGGCAGATTCATTTAAATCAG
GCTACTGTAAATGAGTTTCGGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTGGAATACAGGCAAAAGAA
TGGTGGTTTTAAAAATATTGATGAAATTAAAAACGTCAAAGGAATCGGCCCCGCTATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

84.559

100

0.846
  comEA Acinetobacter baumannii D1279779

84.559

100

0.846
  comEA Acinetobacter baylyi ADP1

46.364

80.882

0.375

Multiple sequence alignment