Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABLB99_RS01485 Genome accession   NZ_CP157447
Coordinates   318878..319522 (+) Length   214 a.a.
NCBI ID   WP_006581060.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313878..324522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS01465 (ABLB99_01465) - 313923..314255 (+) 333 WP_002051722.1 hypothetical protein -
  ABLB99_RS01470 (ABLB99_01470) - 314258..315082 (+) 825 WP_004884737.1 putative RNA methyltransferase -
  ABLB99_RS01475 (ABLB99_01475) ponA 315100..317658 (-) 2559 WP_004884735.1 penicillin-binding protein PBP1a -
  ABLB99_RS01480 (ABLB99_01480) comM 317820..318878 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  ABLB99_RS01485 (ABLB99_01485) pilN 318878..319522 (+) 645 WP_006581060.1 PilN domain-containing protein Machinery gene
  ABLB99_RS01490 (ABLB99_01490) pilO 319519..320259 (+) 741 WP_006581061.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABLB99_RS01495 (ABLB99_01495) pilP 320270..320797 (+) 528 WP_004711660.1 pilus assembly protein PilP Machinery gene
  ABLB99_RS01500 (ABLB99_01500) pilQ 320860..323025 (+) 2166 WP_004711661.1 type IV pilus secretin PilQ family protein Machinery gene
  ABLB99_RS01505 (ABLB99_01505) aroK 323037..323606 (+) 570 WP_002051689.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24226.61 Da        Isoelectric Point: 6.0119

>NTDB_id=1006910 ABLB99_RS01485 WP_006581060.1 318878..319522(+) (pilN) [Acinetobacter nosocomialis strain XH1727]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIKSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQNLQSQRPVVVRLVDELVRVTPPAMYLTKFSRVGDKFTIEGKAESPNTVAELLRNLESSPWYRNAFMNSFLA
NEDKKDKTASSLLPRVEDNYGSFVVTVDLGEMGVTTTNNDADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1006910 ABLB99_RS01485 WP_006581060.1 318878..319522(+) (pilN) [Acinetobacter nosocomialis strain XH1727]
ATGGCAACAATTAACTTACTACCTTGGCGTGAAGAGCTGAGGGAACAACGAAAAAAACAATTTATAACTTTATGCTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGTGGATGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ACCAACTTATTAAAAGTACAAATCAAAACCTTGATCAGCAATTAAAAGCATTAAACGGTTTACAAGAGCAGCGTGATGCC
ATTATTGAGCGTATGAAGTTGATTCAAAATTTGCAGAGTCAACGGCCAGTAGTGGTGCGATTAGTTGATGAGCTCGTTCG
AGTCACGCCACCAGCAATGTATCTAACCAAATTCAGTCGAGTAGGGGATAAATTTACGATCGAGGGTAAAGCTGAGAGTC
CAAATACGGTAGCTGAATTGCTTCGTAACCTTGAATCGTCTCCTTGGTATCGTAATGCTTTTATGAATTCTTTCTTGGCT
AATGAAGATAAAAAAGATAAGACTGCGAGTTCTCTTCTTCCTAGGGTGGAAGATAACTATGGCAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGAATAACGATGCTGATAAGCCAGCCGTAGCGAAAGACACGGGGGCAGCCA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

91.121

100

0.911
  comN Acinetobacter baylyi ADP1

72.5

93.458

0.678

Multiple sequence alignment