Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABLB98_RS01280 Genome accession   NZ_CP157435
Coordinates   266593..266919 (+) Length   108 a.a.
NCBI ID   WP_005163077.1    Uniprot ID   N9K5W5
Organism   Acinetobacter sp. XH1639     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 265659..266360 266593..266919 flank 233


Gene organization within MGE regions


Location: 265659..266919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS01275 (ABLB98_01275) - 265659..266360 (+) 702 WP_369028918.1 IS1-like element ISPa14 family transposase -
  ABLB98_RS01280 (ABLB98_01280) hns 266593..266919 (+) 327 WP_005163077.1 H-NS family nucleoid-associated regulatory protein Regulator

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.04 Da        Isoelectric Point: 4.8619

>NTDB_id=1006831 ABLB98_RS01280 WP_005163077.1 266593..266919(+) (hns) [Acinetobacter sp. XH1639]
MKPDISDLSVEDLKRLQVEAEALIASKKDQAIEDAYNEIIAIAEAVGFSVEELLELGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1006831 ABLB98_RS01280 WP_005163077.1 266593..266919(+) (hns) [Acinetobacter sp. XH1639]
ATGAAACCAGATATTAGTGATTTATCTGTAGAAGACTTAAAACGGTTACAGGTAGAAGCGGAAGCTTTAATCGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATGAAATTATTGCAATAGCTGAAGCAGTTGGTTTTAGTGTTGAAGAGTTAT
TAGAGTTAGGTGAGCAAAAGCGTAAGAAGACAACGCGCAAAGCAGTAGAACCACGCTACCGTAATAAAAATAATACAGAA
GAAACTTGGACTGGTCGTGGTAAACAGCCACGTTGGTTAGTTGCTGAATTAGAAAAAGGTGCAAAACTTGAAGATTTTCT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K5W5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889

Multiple sequence alignment