Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABLC00_RS16205 Genome accession   NZ_CP157432
Coordinates   3479481..3480365 (-) Length   294 a.a.
NCBI ID   WP_006582617.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3474481..3485365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS16190 (ABLC00_16190) miaB 3476328..3477779 (+) 1452 WP_002050781.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ABLC00_RS16195 (ABLC00_16195) - 3477817..3478905 (+) 1089 WP_002050786.1 PhoH family protein -
  ABLC00_RS16200 (ABLC00_16200) ybeY 3478915..3479391 (+) 477 WP_006582618.1 rRNA maturation RNase YbeY -
  ABLC00_RS16205 (ABLC00_16205) tonB2 3479481..3480365 (-) 885 WP_006582617.1 energy transducer TonB Machinery gene
  ABLC00_RS16210 (ABLC00_16210) - 3480599..3481270 (+) 672 WP_006582615.1 hypothetical protein -
  ABLC00_RS16215 (ABLC00_16215) - 3481428..3482141 (+) 714 WP_002050776.1 DUF3108 domain-containing protein -
  ABLC00_RS16220 (ABLC00_16220) - 3482213..3482788 (+) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  ABLC00_RS16225 (ABLC00_16225) wrbA 3482843..3483445 (-) 603 WP_006582614.1 NAD(P)H:quinone oxidoreductase -
  ABLC00_RS16230 (ABLC00_16230) - 3483726..3484973 (+) 1248 WP_002050751.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33600.44 Da        Isoelectric Point: 9.4514

>NTDB_id=1006812 ABLC00_RS16205 WP_006582617.1 3479481..3480365(-) (tonB2) [Acinetobacter nosocomialis strain XH1679]
MLKKRSLSIEPFHYWWQDRVFIVAIILAILLHTFVLLIHFAMPAPSEQSTKEIAISVRPTEEIVKHADFLAQADQQGSGT
FRAAHRMSSNSPTPMPTDASTGEAQLDTLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1006812 ABLC00_RS16205 WP_006582617.1 3479481..3480365(-) (tonB2) [Acinetobacter nosocomialis strain XH1679]
ATGTTGAAAAAAAGAAGTCTTTCTATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTTTTTATTGTCGCGATAATACT
CGCAATCTTATTGCATACTTTTGTGCTGCTCATCCATTTTGCGATGCCTGCACCATCAGAACAATCGACTAAAGAAATTG
CGATATCGGTTCGTCCTACAGAAGAGATCGTTAAGCATGCAGACTTTTTAGCTCAAGCAGACCAGCAGGGTTCGGGAACT
TTTCGAGCGGCTCATCGAATGTCCAGTAATTCTCCGACGCCTATGCCGACTGATGCTTCAACTGGCGAAGCTCAGTTAGA
CACTTTGGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTATTAATGACTGTGTTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGGAAAAAAGCACTTGAACAGTTACAGAGCCAATTTCAAGCAAAAGCCGCAATGGTCGCGAGC
CTTGAAGCTCAATATTTGCAACGTCAGCAAGATTTCAGCCGCCAACAAAAAATAAAAACGGTAGATGGTATTCAAGCCAA
GAAAGATGCCTCAGCAGCTTATCTAGATAAATTCCGTGAAAAAGTAGAGCTTTACGGTAACCGCTATTATCCAGAAGAAG
CCAAGCAGCAACAGCTAAAAGGTGAAGTCCGCCTTATGGTGATTTTAAATGCTCAAGGGGGAATTCGTGCAATCCGTTTA
CTTGAAAGTTCAGGACATCCAGTTTTAGATGAGGCAGCAAAGGCATCAGTACGTCGTGGAGCACCGTTTGGTCGTTTTGA
TGCAAATATGAAGGATATTTCCGAGCTACGTATTGTGCGTACTTGGCGTTTTGATCCAGCTGAAGCCGAGTTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

95.578

100

0.956

Multiple sequence alignment