Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GPW48_RS09840 Genome accession   NZ_LR738720
Coordinates   1954180..1955964 (-) Length   594 a.a.
NCBI ID   WP_024417148.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1949180..1960964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS09810 - 1949517..1949963 (-) 447 WP_074390175.1 LytTR family DNA-binding domain-containing protein -
  GPW48_RS09815 - 1950141..1950899 (-) 759 WP_002939965.1 TIGR00266 family protein -
  GPW48_RS09820 - 1951107..1951601 (-) 495 WP_024403073.1 beta-class carbonic anhydrase -
  GPW48_RS09825 radA 1951725..1953092 (-) 1368 WP_074390174.1 DNA repair protein RadA Machinery gene
  GPW48_RS09830 - 1953099..1953630 (-) 532 Protein_1867 histidine phosphatase family protein -
  GPW48_RS09835 - 1953635..1954078 (-) 444 WP_074390173.1 dUTP diphosphatase -
  GPW48_RS09840 rcrQ 1954180..1955964 (-) 1785 WP_024417148.1 ABC transporter ATP-binding protein Regulator
  GPW48_RS09845 - 1955965..1957671 (-) 1707 WP_024417147.1 ABC transporter ATP-binding protein -
  GPW48_RS09850 rcrR 1957664..1958113 (-) 450 WP_012027921.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  GPW48_RS09855 - 1958335..1959351 (+) 1017 WP_024381196.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GPW48_RS09860 galU 1959396..1960295 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 66110.18 Da        Isoelectric Point: 5.3962

>NTDB_id=1006809 GPW48_RS09840 WP_024417148.1 1954180..1955964(-) (rcrQ) [Streptococcus suis isolate GD-0001]
MKTLRFFWFYFKRYKLSFAVIFLAIVAATYLQVKTPVFLGNAIAEMGKIGQAYFAAEQIGQSGFKPDLSDFNGVMLNLFF
AYAATVVASLIYTLLFTRIVAHSTNRMRKGLFGKLERLTVAFFDSHKDGDILSRFTSDLDNIQNAFNQSLTQVVTNIALY
VGMVIMMFRQDTRLALVTIASTPVALIALVVIIRLSRKYTDKQQAAVSKLNAYMDEKISGQKAIIVQGVQEETIDGFLEL
NEEVRRTTFKGRLFGGILFPFMNGMSLVNTAIVIFAGSSIVLNDSSLETAAALGLVVTFVQYSQQYYQPIMQIASSWAEL
QLAFTGAHRIQEMFDEPEEVRAQNAPLFTELKEGVEIKDIDFGYLPGQKVLDKVSISAPKGKMVAVVGPTGSGKTTIMNL
INRFYDVNGGSVAFDGRDIREYDLDSLRDKVGIVLQESVLFSGTIADNIRFGDESISQEMVETAARATHIHDFIMSLPEG
YETFVTDDENVFSTGQKQLISIARTLLTDPQVLILDEATSNVDTVTEAKIQKAMEAIIAGRTSFVIAHRLKTILNADEII
VLKDGKVIEQGNHSQLLKLNGFYAELYHNQFVFE

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=1006809 GPW48_RS09840 WP_024417148.1 1954180..1955964(-) (rcrQ) [Streptococcus suis isolate GD-0001]
ATGAAAACACTTAGATTTTTCTGGTTTTATTTTAAACGCTATAAACTGTCCTTTGCTGTGATTTTTCTAGCCATTGTGGC
AGCGACCTACCTGCAGGTTAAGACACCTGTTTTCCTTGGAAATGCCATTGCGGAGATGGGGAAAATTGGTCAGGCTTATT
TTGCTGCAGAGCAGATAGGGCAGTCAGGTTTCAAACCTGACCTGTCTGATTTTAACGGGGTTATGCTCAATCTTTTCTTT
GCCTATGCGGCGACGGTTGTGGCTTCCTTGATTTACACTCTCCTCTTCACGCGTATCGTGGCTCATTCGACCAACCGTAT
GCGTAAGGGCTTATTTGGCAAGCTGGAACGTTTGACAGTTGCCTTCTTTGATAGCCACAAGGACGGGGATATTCTTTCTC
GCTTTACCAGTGATTTGGACAATATCCAAAACGCTTTTAACCAGTCCTTGACCCAAGTGGTGACCAACATTGCCCTTTAT
GTCGGTATGGTTATTATGATGTTCCGTCAGGATACTCGCTTGGCCTTGGTGACCATTGCTTCTACGCCAGTTGCCTTGAT
TGCCTTGGTCGTTATCATCCGCCTATCACGGAAATATACTGATAAGCAACAGGCTGCGGTATCTAAGCTTAATGCATACA
TGGATGAGAAGATTTCCGGACAAAAAGCGATTATTGTACAAGGTGTGCAGGAAGAGACAATTGATGGTTTCTTGGAACTC
AATGAAGAAGTTCGTCGTACGACCTTCAAGGGACGCTTGTTTGGTGGGATTCTCTTCCCATTTATGAATGGGATGAGTTT
GGTCAATACGGCCATTGTTATCTTTGCAGGCTCCAGCATTGTTCTCAACGATAGCTCGCTGGAAACAGCTGCCGCACTTG
GTCTGGTCGTGACCTTTGTTCAATATTCGCAACAGTATTACCAGCCTATCATGCAGATTGCCTCTAGCTGGGCAGAATTG
CAGTTGGCTTTCACAGGTGCTCACCGTATTCAGGAAATGTTTGATGAGCCTGAGGAAGTTCGTGCTCAAAACGCTCCGCT
ATTTACCGAATTAAAAGAAGGTGTTGAAATTAAGGACATCGACTTTGGCTACCTGCCGGGTCAGAAGGTCTTGGACAAGG
TGTCAATCTCTGCTCCTAAGGGCAAAATGGTGGCGGTCGTTGGTCCGACAGGATCTGGTAAGACTACCATTATGAACTTG
ATTAACCGCTTCTACGATGTCAATGGTGGTAGTGTGGCCTTTGATGGTCGCGATATTCGGGAATATGATTTGGATAGCTT
GCGGGATAAGGTCGGTATCGTCTTGCAGGAGTCGGTGCTATTCTCGGGTACTATTGCGGACAATATCCGCTTTGGTGATG
AGAGCATTTCGCAGGAAATGGTGGAAACCGCAGCCCGTGCCACCCATATCCACGACTTTATCATGAGCTTGCCAGAGGGC
TATGAGACCTTTGTGACCGATGATGAGAATGTCTTCTCAACAGGTCAGAAGCAGCTGATTTCCATTGCCCGTACGCTCTT
GACAGATCCACAAGTCTTGATTCTGGACGAAGCAACGTCTAACGTTGATACCGTAACGGAAGCCAAAATTCAAAAGGCCA
TGGAGGCCATTATCGCTGGACGGACCAGCTTCGTCATTGCCCACCGCCTCAAAACCATTCTCAATGCGGACGAAATCATC
GTCCTCAAAGATGGAAAAGTGATTGAGCAAGGCAACCACAGCCAGCTCCTCAAACTCAATGGCTTCTACGCCGAACTCTA
CCACAACCAGTTTGTGTTTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-307)

ABC transporter (ABC_tran)

(371-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.457

98.822

0.36

Multiple sequence alignment