Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABLC00_RS02020 Genome accession   NZ_CP157432
Coordinates   432280..434508 (-) Length   742 a.a.
NCBI ID   WP_033846394.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427280..439508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS02000 (ABLC00_02000) - 427465..428424 (-) 960 WP_033846391.1 DnaJ C-terminal domain-containing protein -
  ABLC00_RS02005 (ABLC00_02005) - 428574..429185 (-) 612 WP_004883506.1 LysE family translocator -
  ABLC00_RS02010 (ABLC00_02010) - 429322..430197 (-) 876 WP_033846392.1 Hsp33 family molecular chaperone HslO -
  ABLC00_RS02015 (ABLC00_02015) - 430363..432204 (-) 1842 WP_033846393.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ABLC00_RS02020 (ABLC00_02020) priA 432280..434508 (-) 2229 WP_033846394.1 primosomal protein N' Machinery gene
  ABLC00_RS02025 (ABLC00_02025) gspF 434657..435862 (+) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  ABLC00_RS02030 (ABLC00_02030) gspG 435886..436401 (+) 516 WP_004710774.1 type II secretion system major pseudopilin GspG -
  ABLC00_RS02035 (ABLC00_02035) - 436667..437011 (+) 345 WP_006580970.1 hypothetical protein -
  ABLC00_RS02040 (ABLC00_02040) - 437072..437332 (-) 261 WP_004710772.1 DUF2798 domain-containing protein -
  ABLC00_RS02045 (ABLC00_02045) - 437573..437911 (+) 339 WP_002156976.1 tRNA-binding protein -
  ABLC00_RS02050 (ABLC00_02050) lnt 437913..439472 (-) 1560 WP_033846395.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83903.77 Da        Isoelectric Point: 8.6657

>NTDB_id=1006794 ABLC00_RS02020 WP_033846394.1 432280..434508(-) (priA) [Acinetobacter nosocomialis strain XH1679]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQIGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGGIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAQRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=1006794 ABLC00_RS02020 WP_033846394.1 432280..434508(-) (priA) [Acinetobacter nosocomialis strain XH1679]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAATAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGTGA
GGTCATGCAAACTGCTTTACCTGCGTTATTACGTCAGGGTAAACCCATGGATGTGTTATTTCATTTATGGAAAATCATTC
CATGTGACAATGTTGAAGCTCTGCTAAAACGCTCAATCAAACAACAAGACGCTTATCAAATTTTAAAATTACACCCTGCC
GGAACTACAGAAAATATTCTTAATTTGAGTGGTGTAGAAACTGCGACACTTAAAGCACTTCAAAAGAAAGGACTGGTAGA
CTGTACGCTTGAGCCACATGACTTTAGCCCAGCACCCGTACAATTGGCTCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCATTAATGCACAGCATCAATATCAAGCGTTTTTGTTAGATGGTTTAACGGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCATGAAGTGCTAAAACAAGGTAAGCAAGTATTGGTGTTAGTTCCTGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCGGGCTTAAATGACTCTA
AACGCTTACAAGCATGGCAACAGGCACAGACTGGAAAGGCCTCTATTATTTTAGGGACGCGTTCAGCCATTTATACGCCG
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAACATGACCTGTCTTATAAACAGCAAGAAGGCTTTCGTTACCATGC
GCGTGATGTCGCGCTTTACCGCGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACCCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAACGTGCAGGCCATGCACTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAACATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCTTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCCTACTCTTACTTACATTGCCATCACTGCGGCACAGTT
CATCGCTTGCCAGATCACTGCCCTGAATGTCAGCAAAAGAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTTCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTAGGTAGCTGGCAAA
AAATTTATGATCGCATTCAGCAAAATAAACCTTCGATTTTGCTTGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTATTGAGTGTCGATATTCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGCCATGTTTATTTACAGACTTTAAGGCCAGATC
ACCCTTTATTAACCACGCTTATTGAAAAAGATTATCGGGCAGTCGCAAAGCAAACATTGGCTGAACGTAAAGTTGCTTTA
CTGCCGCCTTATCGTTATGCAGTTTTAATTCGTGCTGAGTCAAAAGATCGTGACTATACTTTACATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGGTATTGTTGATATTTGGGGGCCAATTCCCGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCCCATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTCCATGCGCAAAGACAGCATCAACTCAGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.844

100

0.978

Multiple sequence alignment