Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FX000_RS18225 Genome accession   NZ_LR698983
Coordinates   3476726..3477010 (-) Length   94 a.a.
NCBI ID   WP_003185421.1    Uniprot ID   Q65EP9
Organism   Bacillus licheniformis isolate MGYG-HGUT-02357     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3471726..3482010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX000_RS18205 smpB 3472536..3473009 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  FX000_RS18210 rnr 3473121..3475424 (-) 2304 WP_003185414.1 ribonuclease R -
  FX000_RS18215 - 3475438..3476184 (-) 747 WP_003185416.1 alpha/beta hydrolase -
  FX000_RS18220 secG 3476325..3476555 (-) 231 WP_003185418.1 preprotein translocase subunit SecG -
  FX000_RS18225 abrB 3476726..3477010 (-) 285 WP_003185421.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FX000_RS18230 - 3477039..3477272 (-) 234 WP_085959538.1 helix-turn-helix domain-containing protein -
  FX000_RS18235 - 3477425..3477826 (+) 402 WP_009329609.1 transcriptional regulator -
  FX000_RS18240 - 3477995..3478393 (+) 399 WP_009329610.1 helix-turn-helix domain-containing protein -
  FX000_RS18245 - 3478441..3479118 (-) 678 WP_003185432.1 ABC transporter permease -
  FX000_RS18250 opuCC 3479135..3480052 (-) 918 WP_009329611.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  FX000_RS18255 - 3480066..3480719 (-) 654 WP_009329612.1 ABC transporter permease -
  FX000_RS18260 - 3480741..3481880 (-) 1140 WP_003185439.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10486.36 Da        Isoelectric Point: 7.9620

>NTDB_id=1006700 FX000_RS18225 WP_003185421.1 3476726..3477010(-) (abrB) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEKK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1006700 FX000_RS18225 WP_003185421.1 3476726..3477010(-) (abrB) [Bacillus licheniformis isolate MGYG-HGUT-02357]
GTGAAAAATACCGGGATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATATACCGACGGCGAAAACATCATTTTGACAAAATACGCCGCAAACATGGCAT
GTTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCGCGCGGAGCGGAA
ATGCTCCTGGAAGATATGATGGCGGCACTGTCAGAAAAGAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(53-85)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65EP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

96.809

0.543

Multiple sequence alignment