Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   FX000_RS14770 Genome accession   NZ_LR698983
Coordinates   2820960..2821709 (-) Length   249 a.a.
NCBI ID   WP_003184052.1    Uniprot ID   -
Organism   Bacillus licheniformis isolate MGYG-HGUT-02357     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2815960..2826709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX000_RS14745 mreC 2816233..2817141 (-) 909 WP_003184040.1 rod shape-determining protein MreC -
  FX000_RS14750 - 2817172..2818182 (-) 1011 WP_003184042.1 rod shape-determining protein -
  FX000_RS14755 ysxA/radC 2818270..2818944 (-) 675 WP_003184045.1 RadC family protein Machinery gene
  FX000_RS14760 - 2818999..2819571 (-) 573 WP_003184048.1 Maf family protein -
  FX000_RS14765 - 2819725..2820756 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  FX000_RS14770 comC 2820960..2821709 (-) 750 WP_003184052.1 prepilin peptidase Machinery gene
  FX000_RS14775 - 2821852..2823150 (-) 1299 WP_009329287.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  FX000_RS14780 - 2823232..2825874 (-) 2643 WP_003184055.1 valine--tRNA ligase -
  FX000_RS14785 - 2826336..2826527 (+) 192 WP_003184058.1 hypothetical protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26944.49 Da        Isoelectric Point: 8.7373

>NTDB_id=1006682 FX000_RS14770 WP_003184052.1 2820960..2821709(-) (comC) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MFIFYLFTAGLVLGSFFNSAGRRISEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLSIVYPAVELSA
AILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGMLPLL
TLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTLTSCFYGEPMI
EWYLQTAWW

Nucleotide


Download         Length: 750 bp        

>NTDB_id=1006682 FX000_RS14770 WP_003184052.1 2820960..2821709(-) (comC) [Bacillus licheniformis isolate MGYG-HGUT-02357]
ATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTTTAATTCGGCCGGGCGCCGCATTTCTGAAAA
GATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGCTGGGCTTCTCGGAGCTGATACCGGTTTTGT
CCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCGATCGTGTATCCGGCAGTTGAGCTCTCCGCC
GCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCTGGTGATTGTGCTTGCTCTTATATCTCTGCT
TTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTGTTCTTTGTTTTTTCCTGCCTGTCTTTGCCG
TCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGTGCGATGGCCGGCGGTATGCTGCCCCTCTTG
ACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTTTGCGGTAATCGGCATGGCGCTCGGCAGCCG
CCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTGGTCTTATTGCACTCCTGGCAGGCAAACTGA
AGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTGACGAGCTGCTTCTATGGCGAACCAATGATC
GAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(102-205)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

47.934

97.189

0.466