Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AAH944_RS04615 Genome accession   NZ_CP157399
Coordinates   916415..917341 (+) Length   308 a.a.
NCBI ID   WP_415536892.1    Uniprot ID   A0A845RQN7
Organism   MAG: Dehalobacter sp. 4CP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 911415..922341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH944_RS04610 (AAH944_04570) smc 912101..915682 (+) 3582 WP_415537775.1 chromosome segregation protein SMC -
  AAH944_RS04615 (AAH944_04575) pilA 916415..917341 (+) 927 WP_415536892.1 signal recognition particle-docking protein FtsY Machinery gene
  AAH944_RS04620 (AAH944_04580) mtnP 917344..918126 (+) 783 WP_415536894.1 S-methyl-5'-thioadenosine phosphorylase -
  AAH944_RS04625 (AAH944_04585) mtnA 918170..919204 (+) 1035 WP_415536895.1 S-methyl-5-thioribose-1-phosphate isomerase -
  AAH944_RS04630 (AAH944_04590) - 919316..920614 (+) 1299 WP_415536897.1 amidohydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 33515.43 Da        Isoelectric Point: 5.1822

>NTDB_id=1006636 AAH944_RS04615 WP_415536892.1 916415..917341(+) (pilA) [MAG: Dehalobacter sp. 4CP]
MAGIFSRLKERLTKTREGFVGKVEQLFTGSGKIDEDLYEELEEILLQSDVGVNTTLKLVEMLRASVKEQKINDRSVLRNT
LQEHITALLGEESPLSFAASKPTVYLVVGVNGVGKTTTIGKLAKNLQGQGKNVLLAAGDTFRAAAIEQLEVWGERSGTEV
IKQSEGADPAAVAFDALHAARSRNADVLLIDTAGRLHNKVNLMKELTKIKKVVEREVPDAPHEVLLVLDATTGQNAIQQV
KLFKEAVDITGIILTKLDGTAKGGVILGIRNEADIPVKLIGIGEGAEDLRPFEPREFARALFDRSEEE

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1006636 AAH944_RS04615 WP_415536892.1 916415..917341(+) (pilA) [MAG: Dehalobacter sp. 4CP]
GTGGCGGGAATATTTTCCAGACTTAAAGAGCGTTTGACCAAAACCAGGGAAGGTTTTGTCGGCAAAGTTGAACAGCTCTT
TACCGGCTCAGGCAAAATTGATGAAGATCTTTATGAAGAATTGGAAGAGATTCTGCTTCAATCAGATGTGGGTGTCAATA
CCACGCTGAAATTGGTTGAAATGCTGCGTGCATCCGTCAAAGAACAAAAAATTAATGACCGCTCCGTGCTGAGGAATACA
CTGCAGGAACATATTACTGCGCTATTGGGCGAAGAGAGTCCCTTGTCTTTTGCGGCTTCCAAGCCCACCGTCTATCTGGT
CGTTGGTGTCAACGGTGTAGGAAAAACGACCACGATTGGCAAGCTGGCCAAAAATCTGCAGGGCCAAGGCAAAAACGTTT
TGCTGGCGGCAGGGGATACTTTCCGAGCAGCAGCGATCGAACAATTGGAAGTATGGGGAGAACGGTCCGGGACAGAGGTT
ATCAAACAGTCGGAGGGGGCTGATCCTGCTGCGGTGGCTTTTGATGCGCTTCATGCGGCAAGATCCCGGAATGCAGATGT
CCTCTTGATCGATACTGCCGGAAGACTGCACAATAAAGTGAATCTGATGAAAGAATTGACCAAGATCAAAAAGGTGGTCG
AGCGTGAAGTTCCGGATGCCCCGCACGAGGTGCTGCTGGTGCTCGATGCGACGACCGGACAGAATGCTATCCAGCAGGTG
AAGCTTTTCAAGGAAGCAGTCGATATAACAGGGATCATACTCACCAAGCTGGACGGTACGGCTAAAGGCGGCGTAATCCT
GGGGATCCGCAATGAAGCGGATATTCCGGTAAAATTGATTGGAATCGGTGAAGGGGCAGAAGATTTAAGGCCTTTTGAAC
CGAGGGAATTTGCCCGGGCACTGTTTGACCGTTCTGAGGAGGAGTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(20-83)

SRP54-type protein, GTPase domain (SRP54)

(102-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A845RQN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.505

98.377

0.487

Multiple sequence alignment