Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAH944_RS01760 Genome accession   NZ_CP157399
Coordinates   364056..365396 (+) Length   446 a.a.
NCBI ID   WP_415535996.1    Uniprot ID   A0A845RXI7
Organism   MAG: Dehalobacter sp. 4CP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 359056..370396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH944_RS01740 (AAH944_01710) - 359451..359924 (+) 474 WP_015043979.1 CtsR family transcriptional regulator -
  AAH944_RS01745 (AAH944_01715) - 359939..360463 (+) 525 WP_415535992.1 UvrB/UvrC motif-containing protein -
  AAH944_RS01750 (AAH944_01720) - 360460..361527 (+) 1068 WP_415535994.1 protein arginine kinase -
  AAH944_RS01755 (AAH944_01725) - 361559..364042 (+) 2484 WP_415535995.1 ATP-dependent Clp protease ATP-binding subunit -
  AAH944_RS01760 (AAH944_01730) radA 364056..365396 (+) 1341 WP_415535996.1 DNA repair protein RadA Machinery gene
  AAH944_RS01765 (AAH944_01735) - 365547..365939 (-) 393 WP_415535998.1 DUF1573 domain-containing protein -
  AAH944_RS01770 (AAH944_01740) - 366209..367375 (+) 1167 WP_415536000.1 PIN/TRAM domain-containing protein -
  AAH944_RS01775 (AAH944_01745) ispD 367353..368540 (+) 1188 WP_415536002.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AAH944_RS01780 (AAH944_01750) gltX 368647..370104 (+) 1458 WP_415536004.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48919.20 Da        Isoelectric Point: 5.3789

>NTDB_id=1006635 AAH944_RS01760 WP_415535996.1 364056..365396(+) (radA) [MAG: Dehalobacter sp. 4CP]
MAGPKTKFYCRECGQESARWLGRCPGCGEWNTLIEERVEKSKPTENRGIVQAIPLTEIQTMEGQRLDTGSQELNRVFGGG
VVEGSFVLLSGEPGIGKSTLFLQMAEYLSRKENVLYVSGEESARQIKLRADRMELSSSRVHILADNSLEAVRSEVLNKGY
KVIFIDSIQTMLLEDVQSAPGSVSQVREGASFLLKLAKENEITVFLAGHITKEGAIAGPRVLEHMVDTVLYFEGDQHHIF
RLLRAVKNRFGPANEIGVFEMRGCGLADVTNPSMFFMGDHTQVSAGSGVAVVMEGTRPLLVEVQALVTSSIFTPPRRTVN
GMDYHRLLMLLAVLDKRAGYAFGARDVFVNIAGGLDVDEPAADLAVIASVMSGIKDQPLGNMALIGELGLTGEIRGVSHI
EQRIREAEKFGFRNCLVPEVNADSIGRTDCRIIPVKNIEEVLDFLF

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1006635 AAH944_RS01760 WP_415535996.1 364056..365396(+) (radA) [MAG: Dehalobacter sp. 4CP]
TTGGCAGGCCCAAAGACGAAGTTCTATTGCCGGGAATGCGGGCAGGAAAGCGCGAGATGGCTCGGAAGGTGTCCCGGATG
CGGTGAATGGAATACACTGATTGAGGAACGCGTAGAAAAATCCAAACCTACAGAAAACAGAGGGATCGTTCAGGCGATCC
CTCTGACTGAAATCCAAACGATGGAAGGGCAGAGACTTGATACCGGAAGTCAGGAACTTAACCGGGTTTTTGGGGGAGGG
GTTGTCGAAGGATCTTTTGTTCTTTTAAGCGGAGAGCCTGGAATCGGCAAATCCACGCTGTTTCTGCAAATGGCAGAATA
TCTTTCCCGGAAGGAAAATGTGCTTTATGTGTCGGGAGAGGAGTCTGCCCGGCAAATCAAACTCAGGGCTGACAGAATGG
AACTTTCTTCTTCCCGGGTACATATACTCGCCGATAATTCCCTGGAAGCAGTACGTTCGGAGGTACTGAACAAAGGCTAT
AAAGTCATTTTTATTGATTCAATTCAGACGATGCTACTCGAAGACGTCCAGTCTGCACCCGGAAGCGTCAGCCAGGTCAG
AGAAGGGGCTTCTTTCTTGTTGAAACTGGCCAAAGAAAATGAGATTACAGTTTTCCTGGCCGGCCATATTACAAAGGAGG
GTGCGATTGCCGGGCCCAGGGTTCTGGAGCACATGGTCGATACGGTCCTGTATTTTGAAGGAGATCAGCACCATATTTTC
CGTCTGCTGCGGGCAGTTAAAAACCGTTTCGGTCCGGCCAACGAAATTGGGGTATTTGAGATGAGAGGCTGCGGTCTAGC
TGATGTTACAAATCCCTCCATGTTTTTTATGGGCGATCATACACAGGTATCCGCTGGTTCCGGGGTGGCTGTCGTAATGG
AAGGAACAAGGCCGCTCTTAGTGGAGGTCCAGGCTTTGGTAACATCGTCCATCTTCACGCCGCCGAGAAGAACCGTAAAC
GGGATGGATTACCACCGCCTGCTGATGCTTCTGGCAGTTCTGGACAAACGGGCCGGATACGCTTTTGGCGCCCGGGATGT
TTTTGTCAATATTGCCGGGGGTCTCGATGTGGATGAACCGGCAGCGGATCTTGCCGTCATCGCCTCTGTGATGTCGGGAA
TTAAAGATCAGCCGCTTGGAAATATGGCCTTAATCGGGGAACTCGGTCTGACCGGAGAAATTAGAGGGGTTTCTCATATT
GAGCAGCGGATCAGAGAAGCGGAAAAATTTGGTTTCCGAAATTGCCTGGTACCAGAAGTCAATGCAGACAGTATCGGGAG
GACCGATTGCCGGATCATTCCGGTTAAGAACATTGAGGAAGTGCTGGATTTTCTTTTTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)

AAA domain (AAA_25)

(65-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A845RXI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

100

0.509
  radA Streptococcus pneumoniae Rx1

48.373

100

0.5
  radA Streptococcus pneumoniae D39

48.373

100

0.5
  radA Streptococcus pneumoniae R6

48.373

100

0.5
  radA Streptococcus pneumoniae TIGR4

48.373

100

0.5
  radA Streptococcus mitis NCTC 12261

48.373

100

0.5
  radA Streptococcus mitis SK321

48.373

100

0.5

Multiple sequence alignment