Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   FX000_RS05765 Genome accession   NZ_LR698983
Coordinates   1125978..1126556 (+) Length   192 a.a.
NCBI ID   WP_003180354.1    Uniprot ID   Q65LN7
Organism   Bacillus licheniformis isolate MGYG-HGUT-02357     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1120978..1131556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX000_RS22455 - 1121480..1121986 (-) 507 WP_370539003.1 methyl-accepting chemotaxis protein -
  FX000_RS22460 - 1122239..1122772 (-) 534 Protein_1065 protoglobin family protein -
  FX000_RS05750 - 1122879..1124429 (-) 1551 WP_044051823.1 FAD-dependent oxidoreductase -
  FX000_RS05755 - 1124549..1125406 (+) 858 WP_003180352.1 SDR family oxidoreductase -
  FX000_RS05760 - 1125472..1125705 (-) 234 WP_003180353.1 IDEAL domain-containing protein -
  FX000_RS05765 comK 1125978..1126556 (+) 579 WP_003180354.1 competence protein ComK Regulator
  FX000_RS05770 - 1126550..1126915 (-) 366 WP_003180357.1 hypothetical protein -
  FX000_RS05775 - 1127124..1127735 (+) 612 WP_003180359.1 TVP38/TMEM64 family protein -
  FX000_RS05780 lepB 1127748..1128266 (+) 519 WP_003180360.1 signal peptidase I -
  FX000_RS05785 - 1128421..1130196 (-) 1776 WP_003180361.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22432.65 Da        Isoelectric Point: 8.6274

>NTDB_id=1006608 FX000_RS05765 WP_003180354.1 1125978..1126556(+) (comK) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSISSFENQVYRTAWLRTKFIDRIEGN
PMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1006608 FX000_RS05765 WP_003180354.1 1125978..1126556(+) (comK) [Bacillus licheniformis isolate MGYG-HGUT-02357]
ATGAGCACAGAGGATATGACAAAGGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTTGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAAATTATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGAAGAAAAGCGGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAACATTTTTCTTTTCCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCTCATCTTTCGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACAGGATTGAAGGAAAC
CCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAAGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterProScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65LN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672