Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FX000_RS04045 Genome accession   NZ_LR698983
Coordinates   806020..806736 (+) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis isolate MGYG-HGUT-02357     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 801020..811736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX000_RS04030 - 801222..802634 (+) 1413 WP_003179741.1 alanine/glycine:cation symporter family protein -
  FX000_RS04035 treP 802824..804236 (+) 1413 WP_011197645.1 PTS system trehalose-specific EIIBC component -
  FX000_RS04040 treC 804310..805998 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  FX000_RS04045 treR 806020..806736 (+) 717 WP_009329065.1 trehalose operon repressor Regulator
  FX000_RS04050 - 806843..807535 (+) 693 WP_003179750.1 N-acetyltransferase -
  FX000_RS04055 - 807662..808978 (+) 1317 WP_061565905.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=1006597 FX000_RS04045 WP_009329065.1 806020..806736(+) (treR) [Bacillus licheniformis isolate MGYG-HGUT-02357]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1006597 FX000_RS04045 WP_009329065.1 806020..806736(+) (treR) [Bacillus licheniformis isolate MGYG-HGUT-02357]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412