Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PAKAF_RS26680 Genome accession   NZ_LR657304
Coordinates   5801398..5801994 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa PAK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5796398..5806994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAKAF_RS26660 (PAKAF_05355) aroK 5797529..5798047 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PAKAF_RS26665 (PAKAF_05356) pilQ 5798059..5800203 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  PAKAF_RS26670 (PAKAF_05357) comL/pilP 5800257..5800781 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PAKAF_RS26675 (PAKAF_05358) pilO 5800778..5801401 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PAKAF_RS26680 (PAKAF_05359) pilN 5801398..5801994 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PAKAF_RS26685 (PAKAF_05360) pilM 5801994..5803058 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PAKAF_RS26690 (PAKAF_05361) - 5803243..5805714 (+) 2472 WP_016253984.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=1006520 PAKAF_RS26680 WP_003095839.1 5801398..5801994(-) (pilN) [Pseudomonas aeruginosa PAK]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1006520 PAKAF_RS26680 WP_003095839.1 5801398..5801994(-) (pilN) [Pseudomonas aeruginosa PAK]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ATAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369