Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABG084_RS03525 Genome accession   NZ_CP157383
Coordinates   679785..681596 (-) Length   603 a.a.
NCBI ID   WP_003646728.1    Uniprot ID   A0A833FGE0
Organism   Lactobacillus sp. JCM 1131     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 674785..686596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG084_RS03500 (ABG084_03500) - 675109..676008 (+) 900 WP_003656149.1 zinc ABC transporter substrate-binding protein -
  ABG084_RS03505 (ABG084_03505) - 676043..676702 (+) 660 WP_003646723.1 ATP-binding cassette domain-containing protein -
  ABG084_RS03510 (ABG084_03510) - 676702..677493 (+) 792 WP_003646724.1 metal ABC transporter permease -
  ABG084_RS03515 (ABG084_03515) - 677613..679124 (+) 1512 WP_025012241.1 lactate permease LctP family transporter -
  ABG084_RS03520 (ABG084_03520) - 679342..679721 (+) 380 Protein_606 hypothetical protein -
  ABG084_RS03525 (ABG084_03525) pepF 679785..681596 (-) 1812 WP_003646728.1 oligoendopeptidase F Regulator
  ABG084_RS03530 (ABG084_03530) - 681760..682884 (+) 1125 WP_003657007.1 LCP family protein -
  ABG084_RS03535 (ABG084_03535) - 682989..683258 (-) 270 WP_003646730.1 hypothetical protein -
  ABG084_RS03540 (ABG084_03540) - 683482..683856 (+) 375 WP_003646731.1 hypothetical protein -
  ABG084_RS03545 (ABG084_03545) - 683883..685430 (+) 1548 WP_003656144.1 ABC-F family ATP-binding cassette domain-containing protein -
  ABG084_RS03550 (ABG084_03550) - 685453..686235 (+) 783 WP_003656143.1 threonine/serine exporter family protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69000.13 Da        Isoelectric Point: 4.9058

>NTDB_id=1006499 ABG084_RS03525 WP_003646728.1 679785..681596(-) (pepF) [Lactobacillus sp. JCM 1131]
MALPTRNEVSDELKWDLSRVFKNDQEWEQEYKQVAQEIKNLSKFKGTLAKSGKELYEGITEILAVNRRLEKVYVYATMSS
DVDTSNTHYLGFVAKAQSLANQMSAAIAFVDPEILSIPAKKLTKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRKVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVSLRKKILGLKDLQMYDMYVPLTGKPVLSYNFNEA
KEEARKALAPLGEDYLKHVDYIFNNRVIDVVESQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFILNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQRYYGNSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANKVVHGTDKEREAYINFLKAGSSDY
PTEIMKHAGVDMTKADYLRDAFDTFEKRLNEFEKIVDELNAEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1006499 ABG084_RS03525 WP_003646728.1 679785..681596(-) (pepF) [Lactobacillus sp. JCM 1131]
ATGGCTCTTCCAACAAGAAATGAAGTATCTGATGAGCTTAAGTGGGACTTAAGTCGTGTTTTTAAAAACGATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCGCAAGAAATCAAGAACTTAAGCAAATTCAAGGGAACACTTGCCAAATCTGGTAAAG
AGCTCTACGAAGGAATTACAGAAATTTTAGCTGTAAATCGACGCTTAGAAAAAGTATATGTTTATGCCACGATGTCAAGC
GACGTTGACACGAGCAATACTCATTACCTTGGCTTTGTTGCCAAAGCTCAAAGCTTAGCTAATCAAATGAGTGCTGCGAT
TGCTTTTGTCGATCCAGAAATCTTGTCTATTCCAGCAAAAAAACTTACTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTACCGGCATCGCCTTGAACAAATTACCCAAAAGCGTCCGCATACTCTACCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGACGCAATGGGAACGTCTGCTAACACTTTTAATGTCTTAACCAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGCTTATATTCGCTTTTAATTCAATCTCAAGACCGCAAGGTTCGCAAAA
ACGCCTTTGACGTAATGTACGCAAGCTACGGTCAGTTTGAAAATAGTCTTGCTTCAACTTTATCAGGCGAAGTAAAGGCT
CACAATTTTAATGCTCGAGTACATAAATATAATTCAGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTTCCAACAGCTGT
TTACGATACCTTAATCAAGGAAGTAAATAGCCACCTCGACTTACTTCACCGCTACGTTTCATTAAGAAAGAAAATTTTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTGCCATTAACTGGGAAGCCCGTTCTTTCTTATAACTTTAACGAAGCA
AAAGAAGAAGCTAGAAAGGCTTTAGCACCATTAGGAGAGGACTATTTAAAGCACGTTGATTACATTTTTAATAACCGTGT
AATTGACGTAGTTGAAAGTCAAAATAAAGTAACTGGTGCATATTCAGGTGGGGCTTACGATACTGATCCATACGAACTAC
TTAACTGGGAAGATAACCTTGATTCACTCTATACTCTAGTTCATGAGACTGGTCACTCTGTCCACTCTTGGTACACAAGA
AATACTCAGCCTTACGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACTACCAACGAAAATATTTTAAC
CGAGTATTTCTTAGATAAAATTACTGATCCAAAGACCCGTGCATTTATCTTAAACCATTATCTTGACTCCTTTAAAGGCA
CACTTTTCCGTCAAACTCAATTTGCGGAATTTGAGCAGTTTATTCATGAAGCTGATGCTAATGGTCAACCGTTAACAGCC
GATGTCCTTGATGAATTTTATGGTAATTTGAATCAAAGATATTATGGTAATAGCGTTGAGCCAGGCGGAGAGATTGCTAA
AGAATGGGCGCGTATTCCCCACTTCTACTACAACTTCTACGTTTACCAATACGCAACAGGTTTTGCGGCTGCAACTGCTC
TTGCCAATAAAGTTGTTCACGGCACTGACAAAGAACGTGAGGCTTATATTAATTTCTTAAAGGCTGGCTCTTCCGATTAC
CCAACAGAAATTATGAAACATGCTGGCGTTGATATGACTAAGGCTGATTACTTGAGGGATGCTTTTGATACTTTTGAAAA
GCGTCTTAATGAATTTGAAAAAATTGTTGATGAATTAAACGCTGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A833FGE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.525

98.507

0.517

Multiple sequence alignment