Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PAKAF_RS09215 Genome accession   NZ_LR657304
Coordinates   1966624..1966953 (+) Length   109 a.a.
NCBI ID   WP_016253166.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa PAK     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1961624..1971953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAKAF_RS09200 (PAKAF_01835) - 1962239..1963201 (+) 963 WP_016253165.1 SDR family oxidoreductase -
  PAKAF_RS09205 (PAKAF_01836) - 1963201..1964238 (+) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  PAKAF_RS09210 (PAKAF_01837) - 1964436..1966433 (+) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  PAKAF_RS09215 (PAKAF_01838) comEA/comE1 1966624..1966953 (+) 330 WP_016253166.1 ComEA family DNA-binding protein Machinery gene
  PAKAF_RS09225 (PAKAF_01840) - 1967170..1968366 (-) 1197 WP_016253167.1 amino acid aminotransferase -
  PAKAF_RS09230 (PAKAF_01841) uvrB 1968554..1970566 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=1006468 PAKAF_RS09215 WP_016253166.1 1966624..1966953(+) (comEA/comE1) [Pseudomonas aeruginosa PAK]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRASHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=1006468 PAKAF_RS09215 WP_016253166.1 1966624..1966953(+) (comEA/comE1) [Pseudomonas aeruginosa PAK]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGTCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment