Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   FQT45_RS09170 Genome accession   NZ_LR595858
Coordinates   1857586..1860003 (+) Length   805 a.a.
NCBI ID   WP_077322523.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1852586..1865003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS09145 (NCTC10228_01888) mutS/mutS2 1852630..1854963 (-) 2334 WP_077322520.1 endonuclease MutS2 Machinery gene
  FQT45_RS09150 (NCTC10228_01889) - 1855033..1855578 (-) 546 WP_077322521.1 CvpA family protein -
  FQT45_RS09155 (NCTC10228_01890) - 1855581..1855889 (-) 309 WP_003084886.1 hypothetical protein -
  FQT45_RS09160 (NCTC10228_01891) rnhC 1856008..1856925 (+) 918 WP_077322552.1 ribonuclease HIII -
  FQT45_RS09165 (NCTC10228_01892) lepB 1856941..1857534 (+) 594 WP_077322522.1 signal peptidase I -
  FQT45_RS09170 (NCTC10228_01893) recD/recD2/recDB 1857586..1860003 (+) 2418 WP_077322523.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FQT45_RS09175 (NCTC10228_01894) - 1860084..1860557 (+) 474 WP_077322524.1 hypothetical protein -
  FQT45_RS09180 (NCTC10228_01895) dinB 1860723..1861816 (-) 1094 Protein_1761 DNA polymerase IV -
  FQT45_RS09185 (NCTC10228_01897) pflB 1862025..1864352 (+) 2328 WP_007892399.1 formate C-acetyltransferase -
  FQT45_RS09190 (NCTC10228_01898) - 1864413..1864850 (+) 438 WP_077322525.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 90900.40 Da        Isoelectric Point: 4.9848

>NTDB_id=1006429 FQT45_RS09170 WP_077322523.1 1857586..1860003(+) (recD/recD2/recDB) [Streptococcus pseudoporcinus strain NCTC10228]
MEYFFSGSIDRIIFENASNFFKILLVELEDTDSDFDDVDIIVTGTMADVAEGEDYTFWGELTQHPKYGQQVKLTRYQKNK
PSSSGLIKYFASDHFKGIGKKTAEKIVQLYGENTIDKILEDPSQLETISGLSKANRQAFITKLKLNYGTEQIIAGLVALG
LSNYYAFQIFDTYKDQSLEMVKENPYRLVEEIQGIGFKMADTLAAEVRIASDAPERFRAALLHCLRQESINRGDTYIEAR
DLLDYAITLLEETRQIECDPAQVAQELSQLIADQKVYNRDTKIFDSSLFLAEDGIQKHLNRILATPLTKQLEQSQISDAI
QNIEDQQAIHYDHVQKEAISKALTNKVFILTGGPGTGKTTVIRGILDAYAQLHQIDLDKKDIPIILAAPTGRAARRMNEL
TGLPSGTIHRHLGLNGDNDYQAIEDFLDCDLIIIDEFSMVDTWLANQLLAALASNTQVIIVGDSDQLPSVGPGQVLADLL
KVDSLPQIALRKIFRQSEDSTIVELANQIRQGHLPTDFKEKKADRSYFDAYAQHIPEMITKIVTSAIKSGIDPEEIQILA
PMYKGQAGINNLNQLMQDLMNPLQNQTEFLFNETRFRVGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDEIVMT
FDGSQVTYPRNEWLKITLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGEYSAFDYAIKHVG
DRRKTYLVQCFDAHKKDHQPLQTQQNQLKSSEISPDKSSVIEAPRTAKELAKLREDYRLTVDNFLSIDPMIGLSQEDILS
FFKKM

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=1006429 FQT45_RS09170 WP_077322523.1 1857586..1860003(+) (recD/recD2/recDB) [Streptococcus pseudoporcinus strain NCTC10228]
ATGGAATATTTTTTCTCTGGAAGCATTGATCGGATTATCTTTGAAAATGCTAGTAATTTTTTTAAAATCTTATTAGTGGA
ACTTGAGGATACTGACAGTGATTTTGATGATGTTGACATTATTGTAACAGGAACCATGGCTGACGTGGCTGAAGGAGAAG
ACTATACTTTTTGGGGCGAACTAACCCAACATCCTAAGTATGGGCAACAAGTCAAATTGACACGTTACCAAAAAAATAAA
CCAAGCTCATCAGGTCTCATCAAGTATTTTGCCAGCGACCATTTTAAAGGTATTGGAAAAAAGACGGCTGAAAAAATTGT
CCAGCTTTATGGTGAAAACACTATTGATAAAATCTTAGAAGATCCTAGTCAGTTAGAGACAATATCTGGTCTCTCAAAAG
CTAATCGGCAAGCCTTTATTACCAAATTAAAGCTCAACTACGGTACCGAACAAATCATTGCTGGCTTAGTAGCACTAGGC
CTTTCTAATTACTATGCCTTTCAAATTTTTGATACCTATAAAGATCAAAGCCTAGAAATGGTCAAAGAAAATCCCTATCG
TCTGGTGGAAGAGATCCAAGGAATAGGGTTTAAAATGGCCGATACACTTGCTGCTGAAGTTAGAATTGCTAGTGATGCTC
CAGAACGTTTCCGTGCCGCCCTTTTACACTGCTTACGGCAAGAATCCATAAATCGAGGGGATACCTATATTGAAGCCCGA
GACCTGCTTGACTATGCTATTACCCTCTTAGAGGAAACACGTCAAATAGAATGTGACCCTGCTCAAGTTGCTCAAGAATT
GAGTCAATTAATTGCTGACCAAAAAGTCTACAACCGTGATACCAAGATCTTTGATAGCAGTCTCTTTCTTGCTGAAGATG
GTATTCAAAAGCACCTCAACCGCATACTTGCAACCCCTCTAACAAAGCAATTAGAACAAAGTCAAATTAGCGATGCCATT
CAAAATATTGAAGACCAGCAAGCTATCCATTATGATCACGTTCAAAAAGAAGCTATCTCTAAAGCATTAACCAATAAAGT
ATTTATCCTTACTGGGGGACCTGGGACAGGAAAAACGACGGTTATCAGAGGAATCCTAGATGCCTACGCTCAGTTGCATC
AGATTGACCTTGATAAAAAAGATATCCCCATTATTCTAGCTGCTCCAACGGGGCGTGCTGCCCGACGCATGAACGAATTA
ACGGGTTTACCTAGTGGAACAATACACCGTCACCTTGGTTTAAACGGCGACAATGATTATCAAGCCATTGAAGACTTTTT
AGATTGCGACCTTATCATCATTGATGAATTTTCCATGGTGGATACTTGGTTGGCTAATCAGCTACTTGCTGCCCTTGCTT
CCAACACCCAAGTCATTATTGTAGGAGATAGTGATCAATTACCTTCTGTCGGCCCCGGTCAAGTCCTAGCGGACCTTTTA
AAAGTAGATAGCCTCCCTCAAATTGCCTTACGTAAAATTTTTAGACAATCTGAAGACTCAACGATTGTTGAGCTGGCTAA
TCAAATACGTCAGGGTCATTTACCTACTGATTTCAAAGAAAAAAAGGCGGATCGTTCTTATTTTGATGCTTATGCTCAAC
ACATACCAGAAATGATTACCAAAATTGTTACCTCTGCCATTAAGAGTGGTATTGACCCTGAGGAAATCCAAATTTTAGCA
CCTATGTATAAAGGCCAAGCCGGTATTAATAATTTGAATCAATTAATGCAAGACCTCATGAATCCTCTTCAAAATCAAAC
CGAATTTCTCTTTAATGAAACGCGTTTTCGAGTGGGAGACAAGGTCTTACATTTGGTAAACGATGCTCAATTAAATGTCT
TTAACGGAGATATTGGTTACATTACCGATTTAATTCCAGCTAAATATACTGAATCAAAACAAGACGAAATTGTTATGACT
TTTGATGGGAGTCAAGTGACCTATCCCCGCAATGAGTGGCTAAAAATTACTTTAGCTTATGCCATGAGTATTCATAAATC
TCAAGGGAGTGAATTTCAAGTTGTTATCCTGCCTATAACACGACAATCTGGGCGCCTGCTTCAACGTAACTTAATTTATA
CCGCTATTACCCGCTCCAAAAGCAAATTGATAATGCTCGGTGAATACTCAGCCTTTGATTATGCTATCAAACATGTGGGT
GACCGGCGTAAAACCTATTTGGTGCAGTGCTTTGACGCTCATAAAAAGGACCACCAACCCTTACAAACCCAACAAAATCA
GCTAAAGAGCTCGGAAATTTCCCCAGATAAAAGCTCAGTAATAGAGGCACCGAGGACAGCGAAGGAGTTAGCTAAGCTCC
GAGAAGACTATCGCTTAACCGTTGATAATTTTCTCTCAATTGATCCAATGATTGGTCTTAGCCAAGAAGATATCCTCTCT
TTTTTCAAAAAAATGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-520)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-640)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.623

90.932

0.388