Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABFV38_RS19645 Genome accession   NZ_CP157375
Coordinates   4174002..4175435 (+) Length   477 a.a.
NCBI ID   WP_048225120.1    Uniprot ID   A0AAU7FVX1
Organism   Enterobacter cloacae complex sp. Mu1197     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4169002..4180435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV38_RS19615 (ABFV38_19615) - 4169569..4170546 (+) 978 WP_045334591.1 calcium/sodium antiporter -
  ABFV38_RS19620 (ABFV38_19620) kdsD 4170560..4171546 (+) 987 WP_008501450.1 arabinose-5-phosphate isomerase KdsD -
  ABFV38_RS19625 (ABFV38_19625) kdsC 4171561..4172127 (+) 567 WP_048225116.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ABFV38_RS19630 (ABFV38_19630) lptC 4172124..4172699 (+) 576 WP_024906353.1 LPS export ABC transporter periplasmic protein LptC -
  ABFV38_RS19635 (ABFV38_19635) lptA 4172668..4173222 (+) 555 WP_020883526.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  ABFV38_RS19640 (ABFV38_19640) lptB 4173229..4173954 (+) 726 WP_008501446.1 LPS export ABC transporter ATP-binding protein -
  ABFV38_RS19645 (ABFV38_19645) rpoN/rpoN1 4174002..4175435 (+) 1434 WP_048225120.1 RNA polymerase factor sigma-54 Machinery gene
  ABFV38_RS19650 (ABFV38_19650) hpf 4175458..4175745 (+) 288 WP_013098943.1 ribosome hibernation promoting factor -
  ABFV38_RS19655 (ABFV38_19655) ptsN 4175828..4176319 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ABFV38_RS19660 (ABFV38_19660) rapZ 4176365..4177219 (+) 855 WP_045910110.1 RNase adapter RapZ -
  ABFV38_RS19665 (ABFV38_19665) npr 4177216..4177488 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  ABFV38_RS19670 (ABFV38_19670) mtgA 4177530..4178255 (-) 726 WP_063622540.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  ABFV38_RS19675 (ABFV38_19675) elbB 4178252..4178905 (-) 654 WP_048029292.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54130.90 Da        Isoelectric Point: 4.3080

>NTDB_id=1006391 ABFV38_RS19645 WP_048225120.1 4174002..4175435(+) (rpoN/rpoN1) [Enterobacter cloacae complex sp. Mu1197]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDDEIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKNNGRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=1006391 ABFV38_RS19645 WP_048225120.1 4174002..4175435(+) (rpoN/rpoN1) [Enterobacter cloacae complex sp. Mu1197]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACCCAGCAATCGCAGGATACAGAAGCGCTCGATACCGCAGATGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGCACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTATCAGGGAGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTCACCCCCTTCT
CCGACACCGACCGCGCGATTGCCACGTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAT
ATTCTGGAAAGCATGGGCGACGACGAGATTGAGCTTGAGGAAGTTGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTAGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTGTCTCAGTTCAGCAAAGAGACGCCATGGCTCG
ACGAGGCGCGCCTAATCATCAGCGATCATCTTGATCTGCTGGCGAACCACGATTTCCGCACCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCGCTCGATCCGCGCCCCGGTCAGTCGATCCAGACCAG
CGAACCCGAGTACGTGATCCCGGATGTGCTGGTCAGAAAAAATAACGGCCGCTGGGTCGTTGAACTGAACTCTGACAGTA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATTTGCAGGAAGCGCGATGGCTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTACGCGTCAGCCGCTGCAT
TGTGGAACAGCAGCAGGCGTTCTTTGAGCAGGGTGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCCACGGCCATCCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCGCTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48

Multiple sequence alignment