Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FQT45_RS02220 Genome accession   NZ_LR595858
Coordinates   419328..420254 (+) Length   308 a.a.
NCBI ID   WP_007893576.1    Uniprot ID   G5K920
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 414328..425254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS02210 (NCTC10228_00447) amiA3 415777..417759 (+) 1983 WP_077322871.1 peptide ABC transporter substrate-binding protein Regulator
  FQT45_RS02215 (NCTC10228_00448) amiC 417829..419328 (+) 1500 WP_007893616.1 ABC transporter permease Regulator
  FQT45_RS02220 (NCTC10228_00449) amiD 419328..420254 (+) 927 WP_007893576.1 oligopeptide ABC transporter permease OppC Regulator
  FQT45_RS02225 (NCTC10228_00450) amiE 420263..421333 (+) 1071 WP_077322870.1 ABC transporter ATP-binding protein Regulator
  FQT45_RS02230 (NCTC10228_00451) - 421326..422249 (+) 924 WP_077322869.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34457.20 Da        Isoelectric Point: 6.4720

>NTDB_id=1006370 FQT45_RS02220 WP_007893576.1 419328..420254(+) (amiD) [Streptococcus pseudoporcinus strain NCTC10228]
MATIDKSKFEFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVFMLIILIAIILMSFIYPIFANYDFGDVSNINDFSKR
YISPSAEYWFGTDQNGQSLFDGVWYGARNSILISVIATVINMLLGVVIGALWGVSKAVDKVMIEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSVRVQVLRYRDLEYNLASQTLGTPTHKIATKNLLPQLVSVIVSMVSLLLPAYIS
SEAFLSFFGLGLPLSEPSLGRLISNYSSNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1006370 FQT45_RS02220 WP_007893576.1 419328..420254(+) (amiD) [Streptococcus pseudoporcinus strain NCTC10228]
ATGGCAACAATTGACAAAAGTAAATTTGAGTTTGTTGAACTCGACAGTTATGCATCAGAAGTCATTGATGCCCCAGCTTA
CTCATACTGGAAATCGGTTTTTCGTCAGTTCTTTTCACGTAAATCAACGGTGTTTATGTTGATTATTCTGATTGCGATTA
TTTTAATGAGTTTTATCTACCCTATATTTGCAAATTATGATTTTGGTGATGTGAGTAACATTAATGATTTTTCAAAACGT
TATATCTCACCAAGTGCTGAATACTGGTTTGGAACTGATCAAAATGGACAATCATTGTTTGATGGTGTTTGGTATGGTGC
CAGAAATTCTATTTTGATTTCTGTCATTGCGACTGTGATTAATATGCTTTTGGGTGTGGTTATTGGTGCTTTGTGGGGTG
TTTCCAAAGCAGTTGATAAAGTGATGATTGAAGTCTATAACGTTATTTCGAATTTGCCTCAAATGCTGATTATTATCGTT
TTAACCTACTCTATTGGAGCAGGATTTTGGAATTTGATATTCGCCTTCTGTGTGACAGGCTGGATTGGAATTGCCTACTC
TGTGAGGGTTCAAGTACTCCGCTACCGCGATTTAGAATATAACCTGGCAAGCCAAACATTAGGAACGCCAACACATAAAA
TTGCAACTAAGAACTTATTGCCACAGTTGGTTTCTGTTATCGTATCAATGGTATCCTTGTTACTTCCGGCCTATATTTCT
TCAGAAGCCTTCCTTTCTTTCTTTGGTTTAGGTTTACCACTTTCAGAACCAAGTCTTGGACGTTTAATTTCTAATTACTC
TTCAAATTTAACAACTAATGCATATTTATTCTGGATTCCTCTAACCACTCTTATTTTGGTATCTTTACCTCTTTATATTG
TAGGGCAAAACTTAGCTGATGCTAGTGATCCAAGAACGCATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K920

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.078

100

0.721
  amiD Streptococcus thermophilus LMD-9

72.078

100

0.721

Multiple sequence alignment