Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABGM96_RS05225 Genome accession   NZ_CP157360
Coordinates   1090015..1091832 (+) Length   605 a.a.
NCBI ID   WP_048686548.1    Uniprot ID   A0AAN2TRX7
Organism   Peribacillus frigoritolerans strain C1141     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1085015..1096832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGM96_RS05205 spxA 1085387..1085782 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  ABGM96_RS05210 mecA 1086274..1086942 (+) 669 WP_034314498.1 adaptor protein MecA -
  ABGM96_RS05215 cls 1087033..1088541 (+) 1509 WP_072272577.1 cardiolipin synthase -
  ABGM96_RS05220 - 1088640..1089848 (+) 1209 WP_375564132.1 competence protein CoiA -
  ABGM96_RS05225 pepF 1090015..1091832 (+) 1818 WP_048686548.1 oligoendopeptidase F Regulator
  ABGM96_RS05230 - 1092765..1093658 (-) 894 WP_053087428.1 ClpXP adapter SpxH family protein -
  ABGM96_RS05235 - 1093655..1094059 (-) 405 WP_048686552.1 globin -
  ABGM96_RS05240 - 1094293..1094961 (-) 669 WP_375564131.1 lytic transglycosylase domain-containing protein -
  ABGM96_RS05245 - 1094984..1095562 (-) 579 WP_048686556.1 CYTH domain-containing protein -
  ABGM96_RS05250 - 1095882..1096502 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69852.35 Da        Isoelectric Point: 4.8018

>NTDB_id=1006264 ABGM96_RS05225 WP_048686548.1 1090015..1091832(+) (pepF) [Peribacillus frigoritolerans strain C1141]
MAQETKTNTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAKASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLKLDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEDLLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1006264 ABGM96_RS05225 WP_048686548.1 1090015..1091832(+) (pepF) [Peribacillus frigoritolerans strain C1141]
ATGGCACAGGAAACAAAAACGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACGTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAGGAAGACCTCAAGAAAGCGGAGGCACATAAAGGGA
CATTGGGAGAAAGCGCAGAAAAGTTATTTGCGGCCCTCCAACTTCAAGATGAGGTTTTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCATTTTATCAAGGGATGGAGGACCGGGCAAAAGCTTTATA
CGCACAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGACGAAAGTAAAGTTGAAGGGTTTTTGG
AAGAAAAAGAGGAATTGAAATTATATAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCCTATCAGCAGAG
CAGGAAGAACTATTGGCGAAGGCATCAGAAGTACTCGATGCATCGGGCAATACTTTCGGTATGCTTAACAATGCCGATCT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAACGAAGTGGAAATTACTCACGGAAGGTATATCAGATTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTATGGGGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAATTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACCGTTTACGATAATCTCGTTAAAACGGTCAACGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAGGTACTGAAATTAGATGAACTTCATATGTATGATCTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTAGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCTTCGGGTACATACG
GGACGAACCCTTATATTCTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAACATCAGCCATATCCATACGGGAATTATTCAATATTTGTAGCGGAAGTTGCATCGAC
TTGTAATGAAAACCTGTTGAATGATTATTTACTGAATTCGATCGAAGATGAAAAGAAACGCATCTATTTACTGAACCATT
ACCTGGAAGGTTTCCGTGGCACATTGTTCCGACAAACGATGTTTGCAGAGTTTGAACATACCATTCATTTAAAAGCTCAA
AACGGGGAAGCGTTGACGGCGGATATGCTTACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGCGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCTCGTATTCCACACTTCTACTATAATTATTATGTTTATCAATATGCAACTG
GAATCAGTGCAGCAACAGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCTTG
AAATCAGGAAGTTCCGATTATCCGATTGAAGTACTCAAAAAGGCTGGCGTCGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGATCTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498

Multiple sequence alignment