Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   FJH52_RS02860 Genome accession   NZ_LR595848
Coordinates   560686..560952 (+) Length   88 a.a.
NCBI ID   WP_001852152.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4559 isolate 4559     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 555686..565952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJH52_RS02840 - 555898..556407 (+) 510 WP_000619950.1 N-acetyltransferase -
  FJH52_RS02845 pheT 556484..558889 (+) 2406 WP_000961567.1 phenylalanine--tRNA ligase subunit beta -
  FJH52_RS02850 - 558957..559957 (-) 1001 Protein_574 endonuclease/exonuclease/phosphatase family protein -
  FJH52_RS02855 - 560113..560601 (+) 489 Protein_575 transposase -
  FJH52_RS02860 HI0659 560686..560952 (+) 267 WP_001852152.1 helix-turn-helix domain-containing protein Machinery gene
  FJH52_RS02865 metE 561212..563461 (+) 2250 WP_000108189.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  FJH52_RS02870 metF 563525..564391 (+) 867 WP_000089981.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9558.11 Da        Isoelectric Point: 4.8274

>NTDB_id=1006257 FJH52_RS02860 WP_001852152.1 560686..560952(+) (HI0659) [Streptococcus pneumoniae strain 4559 isolate 4559]
MEGCPSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=1006257 FJH52_RS02860 WP_001852152.1 560686..560952(+) (HI0659) [Streptococcus pneumoniae strain 4559 isolate 4559]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAACTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

62.338

87.5

0.545