Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABHF33_RS14645 Genome accession   NZ_CP157355
Coordinates   3100515..3101909 (+) Length   464 a.a.
NCBI ID   WP_348944638.1    Uniprot ID   -
Organism   Chitinibacter sp. FCG-7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3095515..3106909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF33_RS14620 (ABHF33_14620) - 3097156..3098133 (+) 978 WP_348944634.1 KpsF/GutQ family sugar-phosphate isomerase -
  ABHF33_RS14625 (ABHF33_14625) kdsC 3098199..3098714 (+) 516 WP_348944635.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ABHF33_RS14630 (ABHF33_14630) lptC 3098725..3099324 (+) 600 WP_348944636.1 LPS export ABC transporter periplasmic protein LptC -
  ABHF33_RS14635 (ABHF33_14635) lptA 3099278..3099772 (+) 495 WP_348944637.1 lipopolysaccharide transport periplasmic protein LptA -
  ABHF33_RS14640 (ABHF33_14640) lptB 3099769..3100491 (+) 723 WP_157669528.1 LPS export ABC transporter ATP-binding protein -
  ABHF33_RS14645 (ABHF33_14645) rpoN/rpoN1 3100515..3101909 (+) 1395 WP_348944638.1 RNA polymerase factor sigma-54 Machinery gene
  ABHF33_RS14650 (ABHF33_14650) raiA 3101940..3102266 (+) 327 WP_157669530.1 ribosome-associated translation inhibitor RaiA -
  ABHF33_RS14655 (ABHF33_14655) - 3102371..3102844 (+) 474 WP_348944639.1 PTS sugar transporter subunit IIA -
  ABHF33_RS14660 (ABHF33_14660) hprK 3102927..3103871 (+) 945 WP_348944640.1 HPr(Ser) kinase/phosphatase -
  ABHF33_RS14665 (ABHF33_14665) rapZ 3103872..3104726 (+) 855 WP_348944641.1 RNase adapter RapZ -
  ABHF33_RS14670 (ABHF33_14670) - 3104716..3105099 (+) 384 WP_348944642.1 NusG domain II-containing protein -
  ABHF33_RS14675 (ABHF33_14675) - 3105080..3105670 (+) 591 WP_348944643.1 Gx transporter family protein -
  ABHF33_RS14680 (ABHF33_14680) - 3105697..3106299 (+) 603 WP_157669535.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52261.24 Da        Isoelectric Point: 4.6839

>NTDB_id=1006252 ABHF33_RS14645 WP_348944638.1 3100515..3101909(+) (rpoN/rpoN1) [Chitinibacter sp. FCG-7]
MKQSLQLRMSQQLNLTPQLQQSIKLLQLSTLDFNQEIEQYLADNPLLEREDTADQPEAAEQAPDTAETSAEQGDDLDGLR
WDEVKSGASFDDDDEHDPTLRVAIEVTLRDHLLQQARLLGLSARDHALLALLIEALDEDGLLTQQLDEIFAQLPDELVQE
FELEVDELRTAHQYLMQLEPLGIGTRSLSECLLLQLKSAPHLPEYELARQLIDAGLELLAVRDFARIKKQFHCDEDQLRQ
AQQIIRSLNPRPAANWGADTTRYVVPDVLVQKLRGRWTVRLNQAAQPKIKVNEMYARLLQGEAGESMAGALQEARWLIKS
IEQRGSTILRVAQAIVARQQAFFEHGEVAMKPMVLRDIADELELHESTISRVTTQKFMLTPRGVLEYKYFFGSHVENDSG
GENSATSIKALIKQLVAQENPKKPLSDSAITEELARQGVAVARRTVAKYREALNIAPASQRKSL

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1006252 ABHF33_RS14645 WP_348944638.1 3100515..3101909(+) (rpoN/rpoN1) [Chitinibacter sp. FCG-7]
ATGAAGCAATCACTGCAGCTGCGCATGTCGCAGCAGCTCAATCTCACGCCCCAGTTGCAGCAGTCGATCAAGCTGCTGCA
ACTGTCTACGCTCGATTTCAATCAGGAAATCGAACAATACCTCGCAGATAACCCTTTGCTTGAACGTGAAGACACGGCTG
ATCAGCCTGAAGCAGCCGAGCAGGCACCAGATACTGCCGAAACCAGTGCCGAGCAGGGCGATGATCTGGATGGTTTGCGC
TGGGACGAAGTCAAAAGCGGGGCTTCTTTTGATGATGACGATGAGCATGACCCAACCTTGCGTGTCGCCATCGAGGTGAC
TTTACGCGACCATTTGCTGCAGCAGGCACGCCTGCTGGGTTTGTCGGCGCGTGATCATGCTTTGCTCGCTTTGCTCATTG
AAGCGCTGGACGAGGATGGTTTGCTGACGCAGCAGCTGGACGAGATCTTTGCGCAATTGCCCGACGAGCTGGTGCAGGAG
TTTGAACTGGAAGTTGATGAGCTGCGCACCGCCCATCAGTATCTGATGCAGCTGGAGCCACTGGGAATCGGCACGCGTTC
TTTGTCCGAATGCCTGCTTTTGCAATTGAAGTCCGCACCGCACTTGCCTGAGTATGAATTGGCACGCCAGTTGATTGATG
CAGGATTGGAATTGTTGGCGGTGCGTGACTTTGCACGGATTAAAAAACAGTTCCATTGTGATGAAGATCAGTTACGGCAG
GCACAGCAGATTATTCGCAGCCTTAATCCGCGGCCCGCAGCCAACTGGGGTGCGGATACAACACGTTATGTGGTGCCGGA
TGTGCTGGTGCAAAAGTTGCGTGGCCGCTGGACTGTACGCTTGAATCAGGCCGCTCAGCCCAAAATTAAAGTCAATGAAA
TGTATGCGCGACTCTTGCAGGGTGAAGCTGGCGAGAGCATGGCTGGCGCTTTGCAGGAAGCTAGGTGGTTGATTAAAAGC
ATAGAACAGCGTGGCAGTACCATTTTGCGAGTAGCCCAAGCGATCGTCGCGCGACAGCAAGCTTTCTTCGAGCATGGCGA
AGTAGCCATGAAGCCCATGGTCTTGCGTGACATTGCTGACGAGCTGGAATTACACGAATCGACAATTTCTCGTGTGACAA
CGCAAAAATTTATGCTGACACCGCGCGGCGTTTTGGAGTACAAATACTTCTTCGGCAGCCATGTTGAAAACGACAGCGGC
GGCGAAAATTCGGCTACATCGATCAAGGCTTTGATCAAACAGCTGGTAGCGCAGGAAAATCCGAAGAAACCCCTATCGGA
TAGTGCTATAACTGAAGAACTCGCAAGGCAAGGTGTCGCAGTAGCGCGGCGCACCGTGGCCAAGTATCGGGAGGCGCTGA
ACATTGCGCCTGCCAGTCAGCGCAAAAGCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(308-462)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(105-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.693

100

0.552

Multiple sequence alignment