Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABHF33_RS04195 Genome accession   NZ_CP157355
Coordinates   903209..904567 (-) Length   452 a.a.
NCBI ID   WP_348945779.1    Uniprot ID   A0AAU7FC40
Organism   Chitinibacter sp. FCG-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 898209..909567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF33_RS04170 (ABHF33_04170) - 899154..899309 (+) 156 WP_157314130.1 DUF3149 domain-containing protein -
  ABHF33_RS04175 (ABHF33_04175) - 899340..900782 (-) 1443 WP_348945777.1 hypothetical protein -
  ABHF33_RS04180 (ABHF33_04180) rpmE 901057..901266 (-) 210 WP_157314132.1 50S ribosomal protein L31 -
  ABHF33_RS04185 (ABHF33_04185) rho 901350..902606 (-) 1257 WP_157314133.1 transcription termination factor Rho -
  ABHF33_RS04190 (ABHF33_04190) trxA 902734..903060 (-) 327 WP_348945778.1 thioredoxin TrxA -
  ABHF33_RS04195 (ABHF33_04195) radA 903209..904567 (-) 1359 WP_348945779.1 DNA repair protein RadA Machinery gene
  ABHF33_RS04200 (ABHF33_04200) flgL 904629..905987 (-) 1359 WP_348945780.1 flagellar hook-associated protein FlgL -
  ABHF33_RS04205 (ABHF33_04205) flgK 906014..908197 (-) 2184 WP_348945781.1 flagellar hook-associated protein FlgK -
  ABHF33_RS04210 (ABHF33_04210) flgJ 908227..909159 (-) 933 WP_348945782.1 flagellar assembly peptidoglycan hydrolase FlgJ -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48573.22 Da        Isoelectric Point: 7.7539

>NTDB_id=1006234 ABHF33_RS04195 WP_348945779.1 903209..904567(-) (radA) [Chitinibacter sp. FCG-7]
MSKVKNQFVCRLCGGFSPKWQGQCPQCGEWNSLEEQVAQVVTTTGRFQSLAADGAIKNLSDVEAEELPRTPTHLAELDRV
LGGGLVPGGVVLIGGDPGIGKSTLLLQALARLSESLPVLYVSGEESAQQIALRARRLGVPAAKVRLYPEISLEKILHALE
REAPKVVVIDSIQTIYTEALTSAPGSVAQVRECSAQLTRFAKRHGTSILLVGHVTKEGALAGPRVLEHIVDAVLYFEGDT
HSSFRLIRAIKNRFGAVNELGVFAMTDKGLREVANPSALFLSQHDVPVPGSCVMVTQEGSRPMLVEVQALVDDAHAAQVK
RLAVGVEQNRLALLLAVLHRHAGIAAFDQDVFINAVGGVRIIEPAADLAMLIAIVSSLKNKALPNKMVVFGEVGLAGEVR
PVQRGQERLREAAKLGFTHAIVPKANRPRQPIEGMTVTAIDRLEQAVDAAFW

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=1006234 ABHF33_RS04195 WP_348945779.1 903209..904567(-) (radA) [Chitinibacter sp. FCG-7]
ATGAGCAAAGTAAAAAACCAGTTTGTTTGCCGTCTCTGCGGTGGCTTTTCTCCCAAGTGGCAGGGGCAGTGTCCGCAATG
CGGCGAGTGGAATAGCCTGGAGGAGCAAGTAGCCCAAGTGGTCACGACCACTGGCCGTTTTCAAAGTCTGGCGGCGGATG
GGGCAATCAAGAATCTATCGGATGTTGAAGCCGAGGAGCTGCCAAGAACTCCAACCCATCTGGCGGAGCTTGATCGGGTT
TTGGGTGGTGGTCTTGTTCCCGGCGGAGTTGTGCTGATTGGCGGCGATCCCGGGATTGGAAAATCAACACTGTTGTTGCA
AGCATTGGCCAGATTATCCGAATCTTTGCCTGTACTTTATGTGAGCGGTGAAGAATCGGCGCAACAGATTGCTTTGCGGG
CACGCAGGCTTGGCGTGCCAGCAGCCAAAGTAAGGTTGTACCCTGAAATTAGTCTGGAAAAGATCCTGCATGCGCTTGAG
CGCGAAGCGCCCAAAGTGGTTGTGATTGATTCCATTCAAACGATATATACCGAGGCTTTGACCAGTGCGCCGGGTAGTGT
GGCCCAGGTGAGGGAATGCTCCGCCCAGCTGACCCGTTTTGCCAAAAGGCATGGCACGTCCATTTTGCTGGTGGGGCATG
TGACCAAAGAAGGCGCTTTGGCGGGCCCAAGGGTGCTTGAGCATATTGTTGATGCCGTTCTGTATTTTGAGGGCGATACT
CACTCGAGTTTTCGCTTGATCCGGGCAATCAAAAACCGCTTTGGCGCAGTGAATGAGTTGGGTGTGTTTGCGATGACCGA
TAAAGGCTTGCGTGAGGTGGCCAACCCTTCGGCACTTTTTCTGAGTCAACATGATGTGCCTGTGCCGGGCTCTTGCGTGA
TGGTAACGCAAGAAGGCTCGCGCCCTATGCTGGTTGAAGTACAGGCTTTGGTCGATGATGCCCATGCGGCACAAGTTAAA
CGGCTGGCGGTTGGGGTTGAGCAGAACCGGCTGGCGCTTTTGCTGGCTGTTTTGCACCGTCATGCTGGGATTGCCGCATT
TGATCAGGATGTGTTTATCAATGCGGTAGGCGGAGTGCGGATTATCGAGCCTGCTGCGGATTTGGCTATGTTGATTGCGA
TTGTCTCATCACTCAAAAATAAAGCGCTGCCCAACAAGATGGTCGTGTTTGGAGAGGTGGGGCTCGCGGGTGAAGTTCGT
CCTGTTCAGCGAGGGCAGGAAAGATTACGTGAGGCAGCAAAGCTGGGCTTTACGCATGCCATTGTGCCCAAAGCCAATCG
TCCTCGTCAGCCTATTGAGGGGATGACTGTGACGGCGATCGATCGATTGGAGCAAGCAGTTGATGCTGCATTTTGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-426)

AAA domain (AAA_25)

(74-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

48.124

100

0.482
  radA Streptococcus mitis SK321

48.124

100

0.482
  radA Bacillus subtilis subsp. subtilis str. 168

49.652

95.354

0.473
  radA Streptococcus pneumoniae TIGR4

49.764

93.805

0.467
  radA Streptococcus pneumoniae Rx1

49.764

93.805

0.467
  radA Streptococcus pneumoniae D39

49.764

93.805

0.467
  radA Streptococcus pneumoniae R6

49.764

93.805

0.467

Multiple sequence alignment