Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABG082_RS11680 Genome accession   NZ_CP157353
Coordinates   2267002..2267772 (-) Length   256 a.a.
NCBI ID   WP_255233981.1    Uniprot ID   -
Organism   Bacillus sp. BS1807G30     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2262002..2272772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG082_RS11660 (ABG082_11660) - 2262095..2262916 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  ABG082_RS11665 (ABG082_11665) - 2262942..2263580 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  ABG082_RS11670 (ABG082_11670) glyS 2263747..2265792 (-) 2046 WP_046527146.1 glycine--tRNA ligase subunit beta -
  ABG082_RS11675 (ABG082_11675) glyQ 2265785..2266672 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  ABG082_RS11680 (ABG082_11680) recO 2267002..2267772 (-) 771 WP_255233981.1 DNA repair protein RecO Machinery gene
  ABG082_RS11685 (ABG082_11685) - 2267808..2267951 (-) 144 WP_008342408.1 YqzL family protein -
  ABG082_RS11690 (ABG082_11690) era 2268099..2269004 (-) 906 WP_007501305.1 GTPase Era -
  ABG082_RS11695 (ABG082_11695) - 2268997..2269395 (-) 399 WP_008342410.1 cytidine deaminase -
  ABG082_RS11700 (ABG082_11700) - 2269508..2269894 (-) 387 WP_024718818.1 diacylglycerol kinase family protein -
  ABG082_RS11705 (ABG082_11705) ybeY 2269872..2270351 (-) 480 WP_017358013.1 rRNA maturation RNase YbeY -
  ABG082_RS11710 (ABG082_11710) - 2270352..2272442 (-) 2091 WP_173408463.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.09 Da        Isoelectric Point: 8.7129

>NTDB_id=1006176 ABG082_RS11680 WP_255233981.1 2267002..2267772(-) (recO) [Bacillus sp. BS1807G30]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDKCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1006176 ABG082_RS11680 WP_255233981.1 2267002..2267772(-) (recO) [Bacillus sp. BS1807G30]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGGACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACAAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment