Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ABG082_RS11405 Genome accession   NZ_CP157353
Coordinates   2216756..2217826 (-) Length   356 a.a.
NCBI ID   WP_017357987.1    Uniprot ID   -
Organism   Bacillus sp. BS1807G30     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2211756..2222826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG082_RS11355 (ABG082_11355) - 2211851..2212423 (-) 573 WP_041091749.1 signal peptidase I -
  ABG082_RS11360 (ABG082_11360) tapA 2212473..2213000 (-) 528 WP_348936104.1 amyloid fiber anchoring/assembly protein TapA -
  ABG082_RS11365 (ABG082_11365) - 2213253..2213579 (+) 327 WP_348936105.1 DUF3889 domain-containing protein -
  ABG082_RS11370 (ABG082_11370) - 2213614..2213808 (-) 195 WP_008342191.1 YqzE family protein -
  ABG082_RS11375 (ABG082_11375) comGG 2213869..2214252 (-) 384 WP_272511702.1 competence type IV pilus minor pilin ComGG -
  ABG082_RS11380 (ABG082_11380) comGF 2214249..2214746 (-) 498 WP_065460694.1 competence type IV pilus minor pilin ComGF -
  ABG082_RS11385 (ABG082_11385) comGE 2214688..2215002 (-) 315 WP_065460696.1 competence type IV pilus minor pilin ComGE -
  ABG082_RS11390 (ABG082_11390) comGD 2214986..2215432 (-) 447 WP_073413947.1 competence type IV pilus minor pilin ComGD -
  ABG082_RS11395 (ABG082_11395) comGC 2215425..2215718 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  ABG082_RS11400 (ABG082_11400) comGB 2215735..2216775 (-) 1041 WP_272511703.1 competence type IV pilus assembly protein ComGB -
  ABG082_RS11405 (ABG082_11405) comGA 2216756..2217826 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  ABG082_RS11410 (ABG082_11410) - 2218282..2219154 (-) 873 WP_348936106.1 STAS domain-containing protein -
  ABG082_RS11420 (ABG082_11420) - 2219380..2219760 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ABG082_RS11425 (ABG082_11425) - 2219973..2220215 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  ABG082_RS11430 (ABG082_11430) - 2220264..2220902 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  ABG082_RS11435 (ABG082_11435) - 2221063..2221236 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  ABG082_RS11440 (ABG082_11440) - 2221261..2221575 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40339.70 Da        Isoelectric Point: 9.0449

>NTDB_id=1006175 ABG082_RS11405 WP_017357987.1 2216756..2217826(-) (comGA) [Bacillus sp. BS1807G30]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1006175 ABG082_RS11405 WP_017357987.1 2216756..2217826(-) (comGA) [Bacillus sp. BS1807G30]
TTGTATGGTATTGAATATTTGGGACAAGAGCTGCTAGAAGAGGCATGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGGTCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCGACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACTGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGAAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCAAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTGCAT
GCAAAAAATGCAAAAGGAGCTCTTTATCGAATGCTGGAATTTGGAGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGAC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTCCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGATGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

65.254

99.438

0.649

Multiple sequence alignment