Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | ABG082_RS11345 | Genome accession | NZ_CP157353 |
| Coordinates | 2210589..2210924 (+) | Length | 111 a.a. |
| NCBI ID | WP_017357978.1 | Uniprot ID | - |
| Organism | Bacillus sp. BS1807G30 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2205589..2215924
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABG082_RS11325 (ABG082_11325) | gcvT | 2206065..2207162 (-) | 1098 | WP_019743009.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ABG082_RS11330 (ABG082_11330) | - | 2207724..2209394 (+) | 1671 | WP_348936103.1 | SNF2-related protein | - |
| ABG082_RS11335 (ABG082_11335) | - | 2209409..2210206 (+) | 798 | WP_035390802.1 | YqhG family protein | - |
| ABG082_RS11340 (ABG082_11340) | - | 2210391..2210555 (+) | 165 | WP_008342197.1 | anti-repressor SinI family protein | - |
| ABG082_RS11345 (ABG082_11345) | sinR | 2210589..2210924 (+) | 336 | WP_017357978.1 | helix-turn-helix domain-containing protein | Regulator |
| ABG082_RS11350 (ABG082_11350) | - | 2210992..2211792 (-) | 801 | WP_035390805.1 | TasA family protein | - |
| ABG082_RS11355 (ABG082_11355) | - | 2211851..2212423 (-) | 573 | WP_041091749.1 | signal peptidase I | - |
| ABG082_RS11360 (ABG082_11360) | tapA | 2212473..2213000 (-) | 528 | WP_348936104.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ABG082_RS11365 (ABG082_11365) | - | 2213253..2213579 (+) | 327 | WP_348936105.1 | DUF3889 domain-containing protein | - |
| ABG082_RS11370 (ABG082_11370) | - | 2213614..2213808 (-) | 195 | WP_008342191.1 | YqzE family protein | - |
| ABG082_RS11375 (ABG082_11375) | comGG | 2213869..2214252 (-) | 384 | WP_272511702.1 | competence type IV pilus minor pilin ComGG | - |
| ABG082_RS11380 (ABG082_11380) | comGF | 2214249..2214746 (-) | 498 | WP_065460694.1 | competence type IV pilus minor pilin ComGF | - |
| ABG082_RS11385 (ABG082_11385) | comGE | 2214688..2215002 (-) | 315 | WP_065460696.1 | competence type IV pilus minor pilin ComGE | - |
| ABG082_RS11390 (ABG082_11390) | comGD | 2214986..2215432 (-) | 447 | WP_073413947.1 | competence type IV pilus minor pilin ComGD | - |
| ABG082_RS11395 (ABG082_11395) | comGC | 2215425..2215718 (-) | 294 | WP_008342186.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12936.47 Da Isoelectric Point: 4.8062
>NTDB_id=1006173 ABG082_RS11345 WP_017357978.1 2210589..2210924(+) (sinR) [Bacillus sp. BS1807G30]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1006173 ABG082_RS11345 WP_017357978.1 2210589..2210924(+) (sinR) [Bacillus sp. BS1807G30]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |