Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABG082_RS10200 Genome accession   NZ_CP157353
Coordinates   2003411..2004046 (+) Length   211 a.a.
NCBI ID   WP_142156170.1    Uniprot ID   -
Organism   Bacillus sp. BS1807G30     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1998411..2009046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG082_RS10160 (ABG082_10160) - 1998573..1999691 (+) 1119 WP_282833941.1 NADH-dependent flavin oxidoreductase -
  ABG082_RS10165 (ABG082_10165) - 1999741..2000247 (-) 507 WP_065460619.1 PTS glucose transporter subunit IIA -
  ABG082_RS10170 (ABG082_10170) - 2000418..2000837 (+) 420 WP_073414769.1 Hsp20/alpha crystallin family protein -
  ABG082_RS10175 (ABG082_10175) - 2000859..2001311 (-) 453 WP_017359729.1 YppG family protein -
  ABG082_RS10180 (ABG082_10180) - 2001420..2001791 (-) 372 WP_017359730.1 YppE family protein -
  ABG082_RS10185 (ABG082_10185) - 2001850..2002083 (-) 234 WP_234717153.1 DUF5446 family protein -
  ABG082_RS10190 (ABG082_10190) sspM 2002280..2002384 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  ABG082_RS10195 (ABG082_10195) - 2002408..2003364 (-) 957 WP_348936068.1 DUF2515 domain-containing protein -
  ABG082_RS10200 (ABG082_10200) recU 2003411..2004046 (+) 636 WP_142156170.1 Holliday junction resolvase RecU Machinery gene
  ABG082_RS10205 (ABG082_10205) - 2004066..2006738 (+) 2673 WP_348936069.1 PBP1A family penicillin-binding protein -
  ABG082_RS10210 (ABG082_10210) - 2006774..2007283 (-) 510 WP_348936070.1 YpoC family protein -
  ABG082_RS10215 (ABG082_10215) nth 2007280..2007942 (-) 663 WP_348936071.1 endonuclease III -
  ABG082_RS10220 (ABG082_10220) - 2007960..2008664 (-) 705 WP_008344601.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24313.61 Da        Isoelectric Point: 9.7583

>NTDB_id=1006170 ABG082_RS10200 WP_142156170.1 2003411..2004046(+) (recU) [Bacillus sp. BS1807G30]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHNHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1006170 ABG082_RS10200 WP_142156170.1 2003411..2004046(+) (recU) [Bacillus sp. BS1807G30]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACAACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTTCTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAGGATGAATTAATGGAAGCAGGCCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

95.735

0.692

Multiple sequence alignment