Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PCN061_RS19640 Genome accession   NZ_CP006636
Coordinates   3907333..3908325 (+) Length   330 a.a.
NCBI ID   WP_023352896.1    Uniprot ID   -
Organism   Escherichia coli PCN061     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3902333..3913325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCN061_RS19615 (PCN061_3889) rbsD 3902457..3902876 (+) 420 WP_000715936.1 D-ribose pyranase -
  PCN061_RS19620 (PCN061_3890) rbsA 3902884..3904389 (+) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  PCN061_RS19625 (PCN061_3891) rbsC 3904394..3905359 (+) 966 WP_047928923.1 ribose ABC transporter permease -
  PCN061_RS19630 (PCN061_3892) rbsB 3905384..3906274 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  PCN061_RS19635 (PCN061_3893) rbsK 3906400..3907329 (+) 930 WP_001300603.1 ribokinase -
  PCN061_RS19640 (PCN061_3894) cytR 3907333..3908325 (+) 993 WP_023352896.1 ribose operon transcriptional repressor RbsR Regulator
  PCN061_RS19645 (PCN061_3895) mdtD 3908291..3909718 (-) 1428 WP_024250370.1 multidrug transporter subunit MdtD -
  PCN061_RS19650 (PCN061_3896) yieP 3909741..3910433 (-) 693 WP_001742436.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36625.93 Da        Isoelectric Point: 5.2141

>NTDB_id=100615 PCN061_RS19640 WP_023352896.1 3907333..3908325(+) (cytR) [Escherichia coli PCN061]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQIPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=100615 PCN061_RS19640 WP_023352896.1 3907333..3908325(+) (cytR) [Escherichia coli PCN061]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGATTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361

Multiple sequence alignment