Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABIS02_RS02205 Genome accession   NZ_CP157346
Coordinates   458297..459814 (-) Length   505 a.a.
NCBI ID   WP_046566900.1    Uniprot ID   A0AAP5Q7B5
Organism   Paraburkholderia fungorum strain zafu-N9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453297..464814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABIS02_RS02180 (ABIS02_02180) - 454151..454783 (-) 633 WP_028199086.1 LON peptidase substrate-binding domain-containing protein -
  ABIS02_RS02185 (ABIS02_02185) rapZ 454823..455716 (-) 894 WP_028199087.1 RNase adapter RapZ -
  ABIS02_RS02190 (ABIS02_02190) hprK 455822..456790 (-) 969 WP_007179412.1 HPr(Ser) kinase/phosphatase -
  ABIS02_RS02195 (ABIS02_02195) - 456950..457465 (-) 516 WP_406868494.1 PTS sugar transporter subunit IIA -
  ABIS02_RS02200 (ABIS02_02200) hpf 457770..458126 (-) 357 WP_028199089.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ABIS02_RS02205 (ABIS02_02205) rpoN/rpoN1 458297..459814 (-) 1518 WP_046566900.1 RNA polymerase factor sigma-54 Machinery gene
  ABIS02_RS02210 (ABIS02_02210) lptB 460000..460785 (-) 786 WP_028199091.1 LPS export ABC transporter ATP-binding protein -
  ABIS02_RS02215 (ABIS02_02215) lptA 460782..461453 (-) 672 WP_028199092.1 lipopolysaccharide transport periplasmic protein LptA -
  ABIS02_RS02220 (ABIS02_02220) lptC 461474..462082 (-) 609 WP_028199093.1 LPS export ABC transporter periplasmic protein LptC -
  ABIS02_RS02225 (ABIS02_02225) - 462079..462639 (-) 561 WP_046566898.1 HAD family hydrolase -
  ABIS02_RS02230 (ABIS02_02230) kdsD 462639..463622 (-) 984 WP_028199095.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55569.67 Da        Isoelectric Point: 5.0706

>NTDB_id=1006103 ABIS02_RS02205 WP_046566900.1 458297..459814(-) (rpoN/rpoN1) [Paraburkholderia fungorum strain zafu-N9]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAISQNPLLENEDDWIASPLRVAADGSLIAQAPNSSPPSDQM
GGNTSSSSTSSSERAENGEPQGVDEYNGLASDGNGDASQWNLDDYGRSGNASDDDDLPPLQIHESSTSLRDHLMAQLRVT
QASQRDRALITFLIESLDDDGYLAATLEEVLADLPDELEVDLDEMNAALALLHSFDPAGVGARSASECLKLQLLRLEQSP
TRTLALDIVAHHLELLAARDFTRLRKHLKANDDDLRDAHILIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELNP
EVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKSFFVHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENPKSPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=1006103 ABIS02_RS02205 WP_046566900.1 458297..459814(-) (rpoN/rpoN1) [Paraburkholderia fungorum strain zafu-N9]
ATGAAAGCCAGCCTCCAACTCCGCCTATCGCAGCATCTTGCGCTGACCCCGCAACTGCAGCAGTCCATCCGGCTGCTTCA
GCTGTCCACGCTCGAACTGCAGCAGGAAGTCGCAATGGCGATCTCGCAGAATCCGCTCCTCGAGAATGAGGACGACTGGA
TCGCGAGCCCCCTGCGCGTGGCGGCCGACGGTTCCCTGATCGCCCAGGCGCCCAATTCTTCGCCACCGTCGGACCAGATG
GGCGGCAATACGTCGTCCTCGTCCACCAGCAGCAGCGAGCGTGCCGAGAATGGCGAACCGCAGGGTGTGGACGAATACAA
CGGCCTCGCGAGCGACGGCAACGGCGATGCGTCGCAATGGAATCTCGACGATTACGGCCGCTCCGGCAATGCGTCGGACG
ACGACGATCTGCCGCCGCTGCAAATCCACGAATCGAGCACCTCGCTGCGCGATCACCTGATGGCGCAACTTCGCGTCACC
CAGGCAAGCCAACGCGACCGCGCGCTGATCACCTTCCTGATCGAATCGCTCGACGACGACGGCTATCTTGCCGCCACGCT
CGAAGAGGTGCTGGCCGATCTGCCCGATGAGCTCGAAGTCGACCTCGACGAAATGAATGCCGCGCTGGCGTTGCTACACA
GCTTCGACCCGGCTGGGGTCGGTGCGCGCTCCGCGTCGGAATGTCTCAAGCTGCAATTGCTGCGGCTCGAGCAGTCGCCT
ACCCGCACACTTGCGCTCGACATCGTCGCCCATCATCTGGAACTGCTCGCGGCACGCGATTTCACGCGCCTGCGCAAGCA
TCTGAAGGCGAACGACGACGATCTGCGCGATGCGCATATTCTGATCCGCTCGCTCGAGCCGTTTCCGGGCGCTGCGTACG
GCAAGGCCGAGGCCGACTACGTGGTGCCGGACATCATGGTGCGCAAAACGGCACAGGGATGGCAGGCGGAGCTCAATCCG
GAAGTGGTGCCGAAGCTGCGTATCAACCATCTATACGCGAATATTCTGCGCAATAACCGTGGCGATCCGGGCAGTGGATC
GTTGCGCCAGCAACTGCAGGAAGCGCGCTGGCTGATCAAGAATATCCAGCAGCGGTTCGAGACGATCCTGCGGGTCGCTC
AGGCTATTGTCGAGCGTCAAAAGAGCTTTTTTGTGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGAGAAATTGCT
GATACGCTGGGCCTACACGAGTCAACTGTCTCGCGTGTGACAACCGGTAAATACATGCTGACCCCATTCGGGACGCTTGA
ATTTAAGTACTTCTTCGGATCACACGTTTCGACTGACACGGGCGGCGCGGCCTCATCCACGGCCATTCGCGCGCTCATCA
AGCAACTGATAGGAGCGGAAAACCCGAAATCTCCTCTTTCAGACAGCCGCATAGCCGAACTGCTGGCGGAACAGGGCTTC
GTGGTCGCACGGCGTACCGTTGCGAAGTATCGCGAAGCGCTGAAGATTCCGGCAGTCAACCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.602

100

0.675

Multiple sequence alignment