Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | FGL23_RS06250 | Genome accession | NZ_LR594049 |
| Coordinates | 1306347..1307459 (-) | Length | 370 a.a. |
| NCBI ID | WP_008809216.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain NCTC10231 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1301347..1312459
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL23_RS06215 (NCTC10231_01240) | mnmE | 1301606..1302979 (+) | 1374 | WP_061603842.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| FGL23_RS06220 (NCTC10231_01241) | - | 1303128..1303697 (-) | 570 | WP_061603843.1 | TlpA family protein disulfide reductase | - |
| FGL23_RS06225 (NCTC10231_01242) | - | 1304110..1304808 (-) | 699 | WP_060553517.1 | LrgB family protein | - |
| FGL23_RS06230 (NCTC10231_01243) | - | 1304801..1305181 (-) | 381 | WP_008809214.1 | CidA/LrgA family protein | - |
| FGL23_RS06245 (NCTC10231_01246) | - | 1305956..1306294 (-) | 339 | WP_012000664.1 | metal-sulfur cluster assembly factor | - |
| FGL23_RS06250 (NCTC10231_01247) | rpoS | 1306347..1307459 (-) | 1113 | WP_008809216.1 | RNA polymerase sigma factor RpoD | Regulator |
| FGL23_RS06255 (NCTC10231_01248) | dnaG | 1307462..1309243 (-) | 1782 | WP_330997472.1 | DNA primase | - |
| FGL23_RS06260 (NCTC10231_01249) | mscL | 1309449..1309829 (+) | 381 | WP_045503293.1 | large conductance mechanosensitive channel protein MscL | - |
| FGL23_RS06265 (NCTC10231_01250) | rpsU | 1309939..1310115 (-) | 177 | WP_000048054.1 | 30S ribosomal protein S21 | - |
| FGL23_RS06270 (NCTC10231_01251) | - | 1310242..1310925 (-) | 684 | WP_048780162.1 | DUF4956 domain-containing protein | - |
| FGL23_RS06275 (NCTC10231_01252) | - | 1310936..1311667 (-) | 732 | WP_060553515.1 | polyphosphate polymerase domain-containing protein | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 42405.08 Da Isoelectric Point: 4.5140
>NTDB_id=1006084 FGL23_RS06250 WP_008809216.1 1306347..1307459(-) (rpoS) [Streptococcus gordonii strain NCTC10231]
MATKQKEVTTFDVQVAEFIRNHKKTGTAIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED
MATKQKEVTTFDVQVAEFIRNHKKTGTAIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED
Nucleotide
Download Length: 1113 bp
>NTDB_id=1006084 FGL23_RS06250 WP_008809216.1 1306347..1307459(-) (rpoS) [Streptococcus gordonii strain NCTC10231]
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAAACTGGTAC
GGCAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATCTATTGCAAC
GTATCCAAGATGCAGGGATCTCTATCACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTAACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAACGATCCTGTTCGTATGTACTTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTAGAGCAGGGAGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGCTTGGTAGTTTCTATTGCAAAGCGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCTGTTGACAAGTTTGACTATACCAAAGGATTTAAGTTTTCAACATA
TGCAACTTGGTGGATCCGTCAGGCCATTACTCGTGCGATCGCTGACCAAGCTAGAACGATCCGAATTCCAGTTCACATGG
TAGAAACGATTAACAAGCTAGTTCGTGAGCAACGTAATCTCTTGCAAGAATTAGGTCAAGATCCAACACCTGAGCAGATT
GCTGAGCGTATGGATATGACACCAGATAAGGTTCGTGAGATTCTTAAGATTGCTCAGGAGCCAGTTTCGCTGGAAACACC
TATCGGTGAGGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTATACAACTC
GTGTTGTTCTTCGTGAGCAGTTGGATGAAGTTTTAGACACCCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTCTTCAATGTGACCCGTGAACGCATCCGCCAAAT
CGAAGCTAAAGCCCTACGTAAACTACGCCACCCAAGCCGTAGCAAGCCACTCCGTGATTTCATTGAAGATTAA
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAAACTGGTAC
GGCAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATCTATTGCAAC
GTATCCAAGATGCAGGGATCTCTATCACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTAACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAACGATCCTGTTCGTATGTACTTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTAGAGCAGGGAGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGCTTGGTAGTTTCTATTGCAAAGCGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCTGTTGACAAGTTTGACTATACCAAAGGATTTAAGTTTTCAACATA
TGCAACTTGGTGGATCCGTCAGGCCATTACTCGTGCGATCGCTGACCAAGCTAGAACGATCCGAATTCCAGTTCACATGG
TAGAAACGATTAACAAGCTAGTTCGTGAGCAACGTAATCTCTTGCAAGAATTAGGTCAAGATCCAACACCTGAGCAGATT
GCTGAGCGTATGGATATGACACCAGATAAGGTTCGTGAGATTCTTAAGATTGCTCAGGAGCCAGTTTCGCTGGAAACACC
TATCGGTGAGGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTATACAACTC
GTGTTGTTCTTCGTGAGCAGTTGGATGAAGTTTTAGACACCCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTCTTCAATGTGACCCGTGAACGCATCCGCCAAAT
CGAAGCTAAAGCCCTACGTAAACTACGCCACCCAAGCCGTAGCAAGCCACTCCGTGATTTCATTGAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.918 |
78.919 |
0.37 |