Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ABI198_RS01615 Genome accession   NZ_CP157344
Coordinates   345155..345715 (+) Length   186 a.a.
NCBI ID   WP_085916952.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2024CK-00537     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340155..350715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI198_RS01590 (ABI198_01590) - 342297..342426 (-) 130 Protein_304 hypothetical protein -
  ABI198_RS01595 (ABI198_01595) rpoZ 342465..342743 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABI198_RS01600 (ABI198_01600) gmk 342816..343445 (-) 630 WP_000015937.1 guanylate kinase -
  ABI198_RS01605 (ABI198_01605) ispH 343568..344518 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABI198_RS01610 (ABI198_01610) fimU 344688..345161 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  ABI198_RS01615 (ABI198_01615) pilV 345155..345715 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  ABI198_RS01620 (ABI198_01620) pilW 345716..346717 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  ABI198_RS01625 (ABI198_01625) pilX 346714..347532 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABI198_RS01630 (ABI198_01630) - 347544..347942 (+) 399 Protein_312 VWA domain-containing protein -
  ABI198_RS01640 (ABI198_01640) - 349139..349969 (+) 831 WP_000854009.1 OXA-134 family carbapenem-hydrolyzing class D beta-lactamase OXA-235 -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20190.13 Da        Isoelectric Point: 8.2254

>NTDB_id=1006063 ABI198_RS01615 WP_085916952.1 345155..345715(+) (pilV) [Acinetobacter baumannii strain 2024CK-00537]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGRTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1006063 ABI198_RS01615 WP_085916952.1 345155..345715(+) (pilV) [Acinetobacter baumannii strain 2024CK-00537]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAGAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409

Multiple sequence alignment