Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   FGL23_RS01275 Genome accession   NZ_LR594049
Coordinates   268485..270848 (-) Length   787 a.a.
NCBI ID   WP_061603501.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 263485..275848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS01255 (NCTC10231_00246) dinB 264891..265955 (+) 1065 WP_061603497.1 DNA polymerase IV -
  FGL23_RS01260 (NCTC10231_00247) - 266153..266482 (+) 330 WP_061603498.1 hypothetical protein -
  FGL23_RS01265 (NCTC10231_00248) - 266585..267217 (+) 633 WP_061603499.1 TetR/AcrR family transcriptional regulator -
  FGL23_RS01270 (NCTC10231_00249) - 267481..268425 (-) 945 WP_061603500.1 hypothetical protein -
  FGL23_RS01275 (NCTC10231_00250) recD/recD2/recDB 268485..270848 (-) 2364 WP_061603501.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FGL23_RS01280 (NCTC10231_00251) lepB 270943..271545 (-) 603 WP_048777409.1 signal peptidase I -
  FGL23_RS01285 (NCTC10231_00252) rnhC 271549..272439 (-) 891 WP_061603502.1 ribonuclease HIII -
  FGL23_RS01290 (NCTC10231_00253) - 272589..272894 (+) 306 WP_008808274.1 hypothetical protein -
  FGL23_RS01295 (NCTC10231_00254) - 272894..273442 (+) 549 WP_061603673.1 CvpA family protein -
  FGL23_RS01300 (NCTC10231_00255) mutS/mutS2 273498..275831 (+) 2334 WP_061603503.1 endonuclease MutS2 Machinery gene

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88501.65 Da        Isoelectric Point: 4.5474

>NTDB_id=1006044 FGL23_RS01275 WP_061603501.1 268485..270848(-) (recD/recD2/recDB) [Streptococcus gordonii strain NCTC10231]
MEFYFSGTVERIVFENPNNFFRILLLDIEDTDAEFDDFEIIVTGTMADIMEGQDYTFWGTLVQHPKYGEQLKVTRYERAK
PSSKGLVKYFASDYFKGIGVKTAQKIVDLYGDNTIDQILADPSRLVTINGLSAVNREAFVSKLRQNYGTEMLLSKLAEYG
IPNKLALQIQDTYKEETLEIVQKYPYQLVEDIQGIGFKIADQLAQQLGIESDAPERFRAGLVHTLFSQSIETGDTYIEAR
DLLSHTIDLLENARQVELDPALVADELAHLIEEDKIQNVETKIFENSLYFAEEGIRSNLIRILEKGKQETFDATKLDSII
EQVEQDLGIRYDHIQKKAICDAINHKVFILTGGPGTGKTTVINGIIATYAALHKLNLAKKQELPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKILIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLTKIYRQGEDSTIVTLASQIQQGILPADFTEKKADRSYFEATSEYIPDMIKKIVAAAIRSGIPAQDVQVL
APMYRGPAGIDQINQLMQDLINPSEKDQLVFEAPDCQYRQGDKIIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITKSSHRMLQRNLIYTAITRAKSKLILLGEFSAFQFAVKN
TGTARKTYLIPRFSDLLEREEPAEVVTTNSDTVDQIPEDGFILTLDNYLSIDPMIGIREEDIKDIFK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=1006044 FGL23_RS01275 WP_061603501.1 268485..270848(-) (recD/recD2/recDB) [Streptococcus gordonii strain NCTC10231]
ATGGAATTCTATTTTTCAGGAACCGTCGAACGCATTGTTTTTGAAAATCCCAACAATTTCTTTCGAATTTTGTTGCTGGA
TATCGAGGACACAGATGCAGAATTTGATGATTTTGAGATTATCGTGACCGGAACCATGGCCGATATCATGGAAGGACAAG
ACTATACTTTTTGGGGAACTCTTGTCCAGCATCCCAAATACGGGGAACAGCTAAAAGTAACTCGCTACGAAAGAGCCAAG
CCAAGCAGTAAGGGCCTGGTCAAGTATTTTGCTAGCGATTATTTTAAAGGGATCGGTGTCAAAACCGCCCAAAAAATAGT
AGACCTCTATGGCGATAATACGATTGACCAGATCTTGGCTGATCCTAGCCGGCTCGTAACTATTAATGGTCTTTCTGCAG
TCAATCGGGAAGCCTTCGTCAGCAAACTGAGACAAAATTACGGCACAGAGATGTTGCTCTCTAAACTCGCTGAATATGGC
ATTCCTAATAAATTAGCCTTGCAGATTCAAGATACCTACAAGGAAGAAACTTTGGAAATTGTCCAAAAATATCCTTATCA
ACTAGTTGAGGACATTCAAGGTATTGGTTTCAAAATAGCTGACCAGTTGGCCCAGCAACTAGGTATTGAAAGCGACGCTC
CAGAGCGTTTCCGGGCTGGGCTTGTTCATACCCTTTTCAGCCAATCTATAGAGACAGGTGATACTTATATAGAAGCACGT
GACTTGCTATCCCACACCATTGATTTGCTGGAGAATGCCCGTCAGGTTGAACTTGATCCTGCCTTGGTAGCGGATGAATT
GGCTCACCTTATCGAAGAAGATAAGATCCAAAACGTTGAGACAAAAATCTTTGAAAACAGTCTTTATTTCGCCGAGGAAG
GTATCCGTAGCAATCTGATTCGGATTCTAGAAAAAGGCAAACAAGAAACCTTTGACGCCACAAAACTCGACAGTATCATC
GAACAAGTCGAGCAAGATTTAGGAATCCGCTATGACCATATTCAAAAGAAGGCCATCTGCGATGCCATTAATCATAAGGT
GTTTATTCTGACGGGTGGGCCAGGAACTGGTAAAACGACCGTTATCAATGGCATCATCGCTACTTATGCTGCTCTTCACA
AACTAAATTTAGCTAAGAAACAGGAATTACCTATTCTGCTTGCTGCTCCGACTGGACGAGCTGCCCGACGAATGAATGAA
TTAACTGGACTCCCAAGTGCCACCATTCACCGGCATTTGGGGATGACTGGAGATGACGATACCAGTCATTTAGATGACTA
TTTGGATGCTGATTTCATCATTGTAGACGAGTTCTCTATGGTCGATACTTGGCTGGCCAATCAACTACTCAGCAATATTT
CTTCCAACAGTAAAATCCTCATTGTGGGGGATGCTGACCAGCTTCCGTCTGTCAGTCCAGGTCAGGTTCTGGCCGACCTT
TTAAAAATACCTCTCTTACCCCAAACTAAACTAACAAAAATCTACCGGCAAGGAGAAGATTCAACAATTGTTACCCTGGC
CAGTCAAATCCAGCAAGGGATTCTGCCAGCTGATTTTACTGAAAAAAAGGCGGATCGTTCCTATTTTGAAGCAACTAGTG
AATATATCCCTGACATGATTAAGAAAATCGTAGCCGCTGCCATTCGTAGTGGCATCCCTGCCCAGGACGTCCAAGTCCTG
GCTCCTATGTACCGAGGACCCGCAGGAATCGACCAGATCAACCAACTCATGCAAGATTTAATAAATCCATCAGAAAAAGA
CCAACTGGTCTTTGAAGCGCCAGACTGCCAGTACCGGCAAGGAGACAAGATCATCCACCTGGTCAATGATGCTGAAAGCA
ATGTGTTTAACGGCGATCTGGGCTATATCACGGACTTGTTGCCAGCAAAATACACCGACTCTAAACAAGATGAACTAACC
ATCAACTTCGATGGAAATGAAATCGTCTATCAACGTAGCGAATGGTACAAGATTCGCTTGGCTTATGCCATGAGTATTCA
TAAATCACAAGGTAGTGAATTTCCTGTCGTGATTCTGCCCATCACCAAGAGTAGCCACCGGATGTTGCAACGCAACCTCA
TCTATACAGCTATTACTCGTGCCAAAAGCAAGCTCATTCTTTTAGGAGAATTTTCTGCCTTTCAATTTGCAGTAAAAAAC
ACGGGCACTGCCCGCAAAACTTATCTTATTCCTCGTTTTTCTGATCTTTTAGAAAGAGAAGAGCCTGCTGAAGTTGTCAC
CACTAATTCTGACACAGTCGATCAAATTCCTGAAGATGGTTTTATCCTTACTCTTGATAACTACCTCAGTATTGATCCCA
TGATTGGAATTAGAGAAGAGGATATTAAAGATATTTTTAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(332-526)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.901

94.917

0.398

Multiple sequence alignment