Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   QUD44_RS09975 Genome accession   NZ_AP027275
Coordinates   1987072..1987860 (+) Length   262 a.a.
NCBI ID   WP_017370086.1    Uniprot ID   A0A9X4SG90
Organism   Lactococcus formosensis strain MS200408A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1982072..1992860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD44_RS09975 (LFMS200408A_19650) spo0J 1987072..1987860 (+) 789 WP_017370086.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 30479.29 Da        Isoelectric Point: 9.2819

>NTDB_id=100600 QUD44_RS09975 WP_017370086.1 1987072..1987860(+) (spo0J) [Lactococcus formosensis strain MS200408A]
MEEKIYQLNIEDISKNPYQPRRNFDSDKLNELSHSIEVNGVLQPIIVRKSNLFGYELLAGERRLRASKLANLDKIPAIIR
SYSDNDMMVLSILENLQRDDMSPLDEAESIKKIIEKSSMTHDEVAKHLGKSRSYISNLLRILKLPQEILLLLEEKKISLA
HARTLLAEENKEKQVFLAHKTIQEKLNVRQLEDLIYQKDSNKKISNKKSIYIVEKEKELTKCLGISNKISYNEKLQKGKL
ELYFESLEKLEELLNKLTKNSQ

Nucleotide


Download         Length: 789 bp        

>NTDB_id=100600 QUD44_RS09975 WP_017370086.1 1987072..1987860(+) (spo0J) [Lactococcus formosensis strain MS200408A]
ATGGAAGAAAAAATTTATCAACTAAATATAGAAGATATTAGTAAAAACCCTTATCAACCACGTAGAAATTTTGATAGTGA
TAAATTAAATGAATTATCGCACTCTATAGAAGTTAATGGTGTACTTCAACCTATTATTGTTCGTAAAAGTAATCTCTTTG
GCTACGAGCTTCTTGCTGGAGAACGACGTTTACGTGCATCAAAGCTGGCAAATCTTGATAAGATTCCAGCGATTATTCGT
TCTTATTCTGATAATGACATGATGGTGCTTTCTATTTTAGAAAACTTACAACGCGATGATATGAGTCCATTAGACGAAGC
TGAAAGCATCAAGAAAATTATAGAGAAAAGTTCAATGACTCATGATGAAGTCGCTAAGCATCTCGGCAAATCTCGCTCTT
ACATTTCTAATCTCCTGCGAATTTTGAAACTTCCTCAAGAAATACTTCTTCTATTAGAAGAAAAAAAAATTAGTTTGGCT
CACGCTCGGACACTTCTTGCTGAAGAAAATAAAGAAAAGCAAGTTTTCTTAGCTCACAAGACCATTCAAGAAAAACTTAA
TGTCCGTCAACTTGAAGATCTTATTTACCAAAAAGATTCAAATAAAAAAATCAGTAACAAAAAAAGTATTTATATAGTAG
AAAAGGAAAAAGAACTTACAAAATGTTTAGGTATAAGTAATAAAATTTCATATAATGAAAAGCTTCAAAAGGGAAAACTT
GAATTGTACTTTGAAAGTCTAGAAAAACTCGAAGAACTACTGAATAAACTCACAAAAAATTCACAGTAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-195)

ParB/Sulfiredoxin domain (ParB_N)

(8-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.225

98.473

0.485

Multiple sequence alignment