Detailed information    

insolico Bioinformatically predicted

Overview


Name   xerS   Type   Machinery gene
Locus tag   FGL22_RS05345 Genome accession   NZ_LR594048
Coordinates   1048449..1049519 (+) Length   356 a.a.
NCBI ID   WP_014612272.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1043449..1054519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL22_RS05325 (NCTC11556_01094) - 1044287..1044934 (+) 648 WP_046159742.1 response regulator transcription factor -
  FGL22_RS05330 (NCTC11556_01095) - 1044918..1045934 (+) 1017 WP_065355320.1 HAMP domain-containing sensor histidine kinase -
  FGL22_RS05335 (NCTC11556_01096) - 1046113..1046535 (+) 423 WP_138129386.1 cupin domain-containing protein -
  FGL22_RS05340 (NCTC11556_01097) - 1046566..1047810 (-) 1245 WP_065355321.1 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  FGL22_RS05345 (NCTC11556_01098) xerS 1048449..1049519 (+) 1071 WP_014612272.1 tyrosine recombinase XerS Machinery gene
  FGL22_RS05350 (NCTC11556_01099) - 1049596..1050036 (+) 441 WP_041784695.1 NusG domain II-containing protein -
  FGL22_RS05355 (NCTC11556_01100) - 1050107..1051057 (-) 951 WP_003057530.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  FGL22_RS05360 (NCTC11556_01101) - 1051047..1052099 (-) 1053 WP_138129388.1 FAD:protein FMN transferase -
  FGL22_RS05365 (NCTC11556_01102) - 1052170..1052676 (-) 507 WP_003057512.1 FMN-binding protein -
  FGL22_RS05370 (NCTC11556_01103) - 1052767..1053765 (-) 999 WP_003057517.1 polyprenyl synthetase family protein -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 41399.65 Da        Isoelectric Point: 9.5512

>NTDB_id=1005985 FGL22_RS05345 WP_014612272.1 1048449..1049519(+) (xerS) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556]
MRRDLLLEKIETYKAIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTDATVIADIDLATLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETMGFLEYVDKDYELKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMVIELIRKGGKRDS
VNVAGFAKPYLEAYLAIRKNRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1005985 FGL22_RS05345 WP_014612272.1 1048449..1049519(+) (xerS) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11556]
ATGAGACGTGATTTATTACTCGAAAAAATAGAAACTTATAAAGCTATCATGCCTTGGTATGTGTTAGAATACTATCAGTC
AAAATTGGCTGTCCCATACAGTTTTACAACGCTATATGAGTATTTAAAAGAATACAAACGTTTTTTTGACTGGTTAATGG
ATGCTGACTTAACGGATGCGACTGTCATTGCTGATATCGATTTAGCGACTCTTGAACACTTGACTAAGAAAGATTTAGAG
GCCTTTGTTCTGTACCTAAGAGAACGCCCTTCTCTTAATACTTATTCCACCAAAGAGGGTCTTTCTCAAACAACGATTAA
TCGCACTTTGTCTGCTTTATCAAGCCTTTATAAATATTTGACTGAAGAGGTTGAAAATGATCAGGGAGAGCCTTATTTCT
ATCGGAATGTCATGAAGAAGGTGTCCACGAAGAAGAAAAAAGAAACCCTAGCTTCTAGAGCTGAAAACATTAAACAAAAG
CTTTTTTTAGGGGATGAAACCATGGGTTTTCTAGAGTATGTAGATAAGGACTATGAACTCAAATTATCCAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAAGAGAGAGATCTAGCTATTATTGCCCTACTACTGGCCTCAGGCGTTCGTCTATCAGAAG
CCGTTAATCTTGATTTAAAAGATGTTAACCTTAATATGATGGTTATTGAGCTTATCCGCAAAGGGGGAAAACGAGATTCA
GTGAATGTTGCAGGTTTTGCTAAACCTTATTTAGAAGCTTATCTGGCTATTCGCAAGAATCGTTATAAGGCTGAAAAACA
AGACCTTGCCTTCTTTTTAACGGAATATCGAGGAGTCCCTAATCGCATGGACGCCTCCAGTATTGAAAAAATGGTTGGTA
AATACTCTCAAGATTTTAAAATTCGTGTGACTCCTCATAAGTTACGACACACATTAGCCACACGTCTTTATGATGCGACC
AAGTCACAGGTTTTGGTTAGTCATCAATTGGGGCATGCATCGACTCAAGTTACCGATTTGTATACCCATATTGTTAACGA
TGAACAAAAAAACGCCTTAGACAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803