Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   QUD44_RS09485 Genome accession   NZ_AP027275
Coordinates   1897653..1898696 (-) Length   347 a.a.
NCBI ID   WP_096368960.1    Uniprot ID   -
Organism   Lactococcus formosensis strain MS200408A     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1892653..1903696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD44_RS09470 (LFMS200408A_18820) rpsB 1892684..1893457 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  QUD44_RS09475 (LFMS200408A_18830) - 1893732..1894772 (+) 1041 WP_096368962.1 lactonase family protein -
  QUD44_RS09480 (LFMS200408A_18840) adhE 1894927..1897620 (+) 2694 WP_096368961.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  QUD44_RS09485 (LFMS200408A_18850) sepM 1897653..1898696 (-) 1044 WP_096368960.1 SepM family pheromone-processing serine protease Regulator
  QUD44_RS09490 (LFMS200408A_18860) coaD 1898686..1899183 (-) 498 WP_096368959.1 pantetheine-phosphate adenylyltransferase -
  QUD44_RS09495 (LFMS200408A_18870) rsmD 1899173..1899712 (-) 540 WP_096368958.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QUD44_RS09500 (LFMS200408A_18880) - 1899807..1901153 (-) 1347 WP_096368957.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37751.97 Da        Isoelectric Point: 7.3456

>NTDB_id=100597 QUD44_RS09485 WP_096368960.1 1897653..1898696(-) (sepM) [Lactococcus formosensis strain MS200408A]
MKNEKIKKHKKLKLYFAVALPLLVIVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNRQFDLVNQFYMQTAQNTAIYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGRTFKSSTEMIDYVSQQKVGGSVTINYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPEVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNSDMKIVPVKTIQDAIDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=100597 QUD44_RS09485 WP_096368960.1 1897653..1898696(-) (sepM) [Lactococcus formosensis strain MS200408A]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATACTTTGCCGTCGCGCTACCGCTTCTTGTTATAGTGGG
GTTGTTCTTCCCCTTACCTTACTATATCGAGCAACCAGGAGGAACGATTCCAGTTAACCAAATGGTTGATGTCGCAGGGA
AAAAAGATGAGCATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGCGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCTACTGTTGTGAGTAGTGAAGAGATGACAGGTGGGATGACCAACCGGCAATTTGATTTGGTTAA
TCAGTTCTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTGGCAGGGAAGCCTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCGACATTTAAAAATGACTTACAACTTTCGGATACGATAACAGCA
GTTAATGGTCGTACTTTCAAATCTTCAACTGAAATGATTGACTATGTGTCTCAACAAAAAGTTGGGGGTAGCGTTACTAT
CAATTATACACGCGTAGATGGCAGTAATCATGAAGCCACAGGGAAGTATATTAAGCTGAGTAATGGTAAGACGGGGATTG
GTATTGGTTTAGTAGACCACACACAAGTTGTGACAGACCCTGAAGTTAAAATTGATGCCGGAAGTATTGGCGGACCGAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACTATCAATGAGGATGGTAGCATCGGGCAAATAGGTGGCGTCGATAAAAAAGTTGCTACAGCAAGTAATGCGGGTG
CAAAAATTTTCCTTTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAACTACACAGATGCGCTT
GCGGCAGCTAAAAAGTTGAATTCAGATATGAAAATCGTACCTGTAAAGACGATTCAAGATGCAATAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.415

100

0.484

Multiple sequence alignment